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6 protocols using ab108319

1

Rat Hippocampal Protein Analysis Protocol

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A RIPA lysis buffer (NCM, No.WB3100) and protease and phosphatase inhibitors were used to lyse rat hippocampal tissue. We measured the protein concentration of the extracts using the BCA protein analysis kit (Beyotime, No.P0010‐1). It was determined that an equal amount of protein (40 mg) was loaded onto the SDS–PAGE gel and then transferred to the PVDF membrane (Immobilon‐P Membrane, IPVH0010). Nonspecific protein binding was blocked with fast blocking solution (Beyotime, No. P0252‐100), followed by incubation with primary antibodies diluted in 1× TBS‐T for 8 h. Primary antibodies used include P‐ERK1/2 (diluted 1:5000, Proteintech, 28733‐1‐AP), ERK1/2 (diluted 1:1000, Proteintech, 11257‐1‐AP), P‐CREB (diluted 1:1000, Affinity, af3189), CREB (diluted 1:500, Abcam, ab32515), BDNF (diluted 1:5000, Abcam, ab108319), and β‐tubulin (diluted 1:5000, Proteintech, 10094‐1‐AP). After primary antibody incubation, the membrane was washed with 1× TBS‐T buffer and then incubated with HRP‐conjugated anti‐rabbit secondary antibody (diluted 1:5000, Proteintech, SA00001‐2) for 1 h. Following another wash, the membrane was visualized using an ECL chemiluminescence kit (NCM, P10100), and images were captured using the Tanon 5200 Multi imaging system (Tanon). Image data analysis was performed using ImageJ software (NIH).
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2

Immunohistochemical Analysis of Neuroinflammation Markers

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Immunohistochemistry was carried out as previously reported with minor modifications (Aricioglu et al., 2019 (link)). Brain tissue was fixed with 4% paraformaldehyde for 24 h. Dehydrated, embedded in paraffin, and cut into slices of 5 µm thickness. After a series of operations, including deparaffinization, antigen repair and blocking, sections were incubated overnight with primary antibodies: anti-BDNF (Abcam, ab108319, 1:200), anti-P2X7 (Proteintech, 28207-1-AP, 1:50), anti-NLRP3 (Abcam, ab214185, 1:200) and anti-Cleaved caspase-1 (Thermo Fisher, PA5-99390, 1:200) at 4°C, followed by secondary antibodies incubation. Then, the slices were colored with diaminobenzidine (DAB). Finally, after dehydration and drying, sections were observed using a light microscope. The density values are analyzed by Image pro-plus software.
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3

Protein Analysis in Brain Tissues

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Total protein was isolated from the brain tissues and adjusted to the same final concentration using the protein extraction kit (Beyotime Institute of Biotechnology, Shanghai, China) and BCA Assay Kit (BCA Protein Assay Kit, Solarbio). SDS-PAGE was used to separate the samples, which were then transferred to NC (nitrocellulose filter) membranes. After being blocked with 2% BSA for 60 min, the NC membranes were incubated overnight with primary antibodies at 4 °C. The following day, after washing three times with PBST(phosphate buffered saline tween-20), the membranes were incubated with the secondary antibody (Goat Anti-Mouse IgG(H+L), Alkaline Phosphatase conjugate, and Goat Anti-Rabbit IgG(H+L), Alkaline Phosphatase-conjugated, Proteintech, China) for 1 h at room temperature. The membranes were washed four times in PBST buffer and incubated with a commercial western immunoblotting detection reagent (western blue stabilized substrate for alkaline phosphatase, Promega, USA) for 5 min. The resulting immuno-reactive bands were exposed by Amersham Imager 600 (GE). The primary antibodies used in this study were PKA (Abcam, ab108385,1:1000), CREB (Abcam, ab32515, 1:1000), pCREB (Abcam, ab32096, 1:1000), BDNF (Abcam, ab108319,1:1500), and GAPDH (Proteintech, 60004-1-Ig, 1:2000).
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4

Western Blot Analysis of BDNF and GAPDH

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Total protein was isolated from the brain tissues using the protein extraction kit (Solarbio, Beijing, China)and adjusted to the same final concentration according to the BCA Assay Kit (Beyotime Institute of Biotechnology, Shanghai, China). SDS‐PAGE was used to separate the samples, which were then transferred to NC (nitrocellulose filter) membranes. After blocking with 2% BSA for 60 min, the NC membranes were incubated overnight with primary antibodies at 4°C. The following day, after washing three times with PBST(phosphate buffered saline tween‐20), the membranes were incubated with the secondary antibodies (Goat Anti‐Mouse IgG(H + L), Alkaline Phosphatase conjugate and Goat Anti‐Rabbit IgG (H + L), Alkaline Phosphatase‐conjugated, Proteintech, China) for 1 h at room temperature. The membranes were washed three times in PBST buffer and incubated with a commercial western immunoblotting detection reagent (western blue stabilized substrate for alkaline phosphatase, Promega, USA) for 5 min. The resulting immunoreactive bands were exposed by Amersham Imager 600 (GE). The primary antibodies used in this study were BDNF (Abcam, ab108319, 1:1500), and GAPDH (Proteintech, 60,004‐1‐Ig, 1:2000).
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5

Molecular Mechanisms of Hippocampal Neuroinflammation

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The hippocampus tissues and cells were homogenized in cold RIPA buffer containing various protease inhibitors. The equal amounts of protein were loaded and separated by 12% SDS-PAGE gels. After being transferred to PVDF and blocked by 5% skim milk powder for 2 h, and the membranes were incubated with antibodies targeting BDNF (Abcam, ab108319, 1:1000), P2X7 (Proteintech, 28207-1-AP, 1:1000), ASC (Proteintech, 10500-1-AP, 1:1000), NF-κB (CST, #8242, 1:1000), P-NF-κB (CST, #3033, 1:1000), NLRP3 (Abcam, ab214185, 1:1000), IL-18 (Proteintech, 10663-1-AP, 1:1000), IL-1β (Proteintech, 16806-1-AP, 1:1000), Cleaved GSDMD (CST, #10137, 1:1000), Cleaved caspase-1 (Thermo Fisher, PA5-99390, 1:1000), β-actin (Proteintech, 66009-1-AP, 1:5000) at 4°C overnight. After washing with TBST, the protein bands were incubated with the HRP-binding secondary antibody (1:1000) for 1 h at room temperature. Finally, blots were displayed with ECL reagent and quantified with ImageJ software.
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6

Protein Expression Analysis Protocols

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Commercial antibodies used were as follows: rabbit anti-BDNF (Abcam, ab108319), rabbit anti-EGR1 (ProteinTech, 55117-1-AP), rabbit anti-pmTOR (Ser2448) (CST, #5536), rabbit anti-mTOR (CST, #2983), mouse anti–β-actin (ZSGB-BIO), rabbit anti–ERK1 + ERK2 (Abcam, ab17942), and mouse anti–Erk1 (pT202/pY204) + Erk2 (pT185/pY187) (Abcam, ab50011). KA, anisomycin, and propranolol were from Sigma-Aldrich. Rapamycin (R-5000) was from LC Laboratories.
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