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Ecodry cdna synthesis premix

Manufactured by Takara Bio
Sourced in Japan

The EcoDry cDNA Synthesis Premix is a ready-to-use reagent for the reverse transcription of RNA into complementary DNA (cDNA). It contains all the necessary components for the cDNA synthesis reaction, including reverse transcriptase, random primers, and dNTPs.

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3 protocols using ecodry cdna synthesis premix

1

Quantitative Analysis of Cytokine Expression

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Total RNA was extracted from liver tissues using RNAiso Plus (Takara Bio Inc., Shiga, Japan) and the first strand of cDNA was synthesized via reverse transcription (EcoDry cDNA Synthesis Premix; Takara Bio, Inc.). The cDNA was amplified with primers and SYBR green (Roche Applied Science, Mannheim, Germany) using a thermocycler (Lightcycler Nano; Roche Applied Science). Gene specific primers used for cDNA amplification were 5′-AGCCCACGTCGTAGCAAACCACCAA-3′ (sense) and 5′-ACACCCATTCCCTTCACAGAGCAAT-3′ (anti-sense) for TNF-α; 5′-GAAAGTCAACTCCATCTGCC-3′ (sense) and 5′-CATAGCACACTACGTTTGCC-3′ (anti ense) for IL-6; and 5′-GGCTGTATTCCCCTCCATCG-3′ (sense) and 5′-CCAGTTGGTAACAATGCCATGT-3′ (antisense) for β-actin. Real-time RT-PCR was performed with an specific amplification cycling conditions as follows: 35 cycles of 30 s at 94°C, 30 s at 65°C and 30 s at 72°C for TNF-α; 35 cycles of 30 s at 94°C, 45 s at 58°C and 30 s at 72°C for IL-6; and 35 cycles of 30 s at 94°C, 30 s at 55°C and 30 s at 72°C for β-actin. The levels of mRNA expression were normalized to that of the β-actin mRNA expression and reported relative to the average of all Δcycle threshold (Ct)-values in each sample using the Ct method. All samples were carried out in duplicate to ensure amplification integrity.
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2

Total RNA Extraction and Gene Expression Analysis

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For total RNA extraction, pods of DW, TW, and SO were harvested from bulked plants at the R3, R4, R5, and R6 growth stages, respectively. The total RNA of the pods was isolated using a RNeasy PowerPlant Kit (Qiagen, Hilden, Germany) and the cDNA was synthesized using a reverse transcription reaction (EcoDry cDNA Synthesis Premix, Takara Bio, Inc., Ohtsu, Japan) following the manufacturer’s instructions. Gene expression was determined by qPCR using an ABI 7300 system (Applied Biosystems, Foster City, CA, USA) with Power SYBR Green PCR Master Mix (Applied Biosystems, Woolston Warrington, UK). All experiments were performed with three replications, and the results were analyzed using ExpressionSuite Software V1.3 (Life Technologies, Foster City, CA, USA). Primers for the target genes (Supplementary Table S3) were designed using Primer3.0 (http://primer3.ut.ee/). GmActin gene (Glyma.18g290800) was used as a control gene.
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3

RNA Extraction and cDNA Synthesis

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Leaf and root samples were collected at 14 days after flooding (DAF) in microtubes, immediately kept into liquid nitrogen, and stored at -80 °C until RNA extraction (Dhungana et al. 2020b ). Total RNA from the leaf and root samples were isolated using an RNA extraction kit (RNeasy PowerPlant Kit, Qiagen, Hilden, Germany) following the manufacturer's instructions.
The cDNA was synthesized through a reverse transcription reaction using the EcoDry cDNA synthesis premix (Takara Bio Inc., Shiga, Japan), following the manufacturer's instructions.
The concentrations of RNA and cDNA were determined using a NanoDrop 2000 spectrophotometer (Thermo Scientific, Waltham, MA, USA).
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