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254 protocols using ab10983

1

Evaluating UCP1 Expression and Hepatic Lipid Content

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WAT UCP1 expression was evaluated using anti-UCP1 antibody (1:500; ref. ab10983; Abcam, Cambridge, UK) as previously reported [23 (link),29 (link),30 (link)]. Hepatic lipid content was investigated through oil red O staining, as previously shown [17 (link),24 (link),28 (link),31 (link),32 (link),33 (link)]. The pictures were obtained using a digital camera Olympus XC50 (Olympus Corporation; Tokyo, Japan) at 20×. Digital liver and WAT obtained images were analyzed with ImageJ Software (National Institutes of Health; Bethesda, MD, USA). GFP fluorescence was observed after perfusion of the animals and detected with a fluorescence microscope Olympus IX51 [4 (link),17 (link),23 (link),24 (link),25 (link),26 (link),27 (link),30 (link)].
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2

Quantitative Immunoblotting for Protein Analysis

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Immunoblotting was utilized to quantify relative protein amounts as described previously [33] (link). Cell or tissue samples were lysed with radio immunoprecipitation assay (RIPA) buffer and 30 μg protein supernatants were resolved in an SDS-PAGE. The following primary antibodies were used: mouse anti-chicken pan-actin antibody, clone c4, MAB1501 (EMD Millipore, mouse monoclonal antibody, 42 kDa, 1:5000 dilution); rabbit anti-LUC peptide (aa 150–250), EPR17790 (Abcam, rabbit monoclonal antibody, 61 kDa, 1:10000 dilution); rabbit anti-human UCP1 peptide (aa 145–159) antibody, ab10983 (Abcam, rabbit polyclonal antibody, 33 kDa, 1:5000 dilution). Secondary antibodies were from LI-COR: IRDye 680CW donkey-anti-mouse IgG (1:20000 dilution) and IRDye 800CW goat-anti-rabbit IgG (1:20000 dilution)
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3

Quantitative Analysis of UCP1 in scWAT

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Homogenates of scWAT were prepared using RIPA lysis buffer (50 mm Tris/HCl, 150 mm NaCl, 5 mm EDTA, 30 mm pyrophosphate, 50 mm NaF, 1% (v/v) Triton X‐100, 1 mm PMSF, 2 mm orthovanadate) with Halt protease and phosphatase inhibitor cocktail (Thermo Scientific). Protein levels were determined, normalized using the bicinchoninic acid assay (Pierce) and subjected to a 4–15% gradient SDS/PAGE using the Mini Protean 3 System (Bio‐Rad, Hercules, CA, USA), followed by transfer to poly(vinylidene difluoride) membranes. Standard western analysis was performed using 5% milk in PBS as blocking solution and antibodies to UCP1 [ab10983, 1.3 µg·mL−1 (1 : 1000), Abcam] and actin [a2066, 6 µg·mL−1 (1 : 100), Sigma, Zwijndrecht, The Netherlands]. HRP‐labelled secondary antibodies were used at 1 : 5000 dilution, and visualization was done by ChemiDoc MP Imaging Systems (Bio‐Rad).
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4

Quantifying Interscapular BAT and Adipose Tissue

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Interscapular BAT, other tissues and skin were dissected and paraformaldehyde fixed (4%) overnight before paraffin embedding and sectioning/staining. For quantification of lipid droplet size, dermal white adipose tissue (dWAT) thickness and density of vessels stained by podocalyxin (PdcX), six independent fields were obtained for each tissue from each mouse and quantified using open source Fiji image processing package (https://loci.wisc.edu/software/fiji). BAT tissue samples were promptly dissected and flash frozen for lysis and analysis of UCP1 expression via immunoblotting as described by Kasza et al. [25] , using anti-UCP1 antibody (cat#ab10983) from Abcam.
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5

Quantitative Western Blot Analysis

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Western blots were performed as previously described. Briefly, total protein lysates from iWAT and BAT (180 and 30 μg) samples were separated by SDS-PAGE, electrotransferred onto a polyvinylidene difluoride membrane (Immobilon-P, Millipore, Billerica, MA, USA) and probed with antibodies against Ucp1 (ab10983, Abcam, Cambridge, United Kingdom), and alpha-tubulin (T5168, Sigma-Aldrich, St. Louis, MO, USA). The antibodies dilution was 1:1000. For protein detection biotinylated secondary antibody conjugates, diluted (1:5000) and chemiluminescence (Thermo Fisher Scientific, Madrid, Spain) were used. Then, the membranes were exposed to radiograph film (Super RX, Fuji Medical X-Ray Film; Fujifilm, Tokyo, Japan) and developed with developer and fixing liquids (AGFA, Mortsel, Belgium) under appropriate dark room conditions. Protein levels were relatively quantitated by normalization with alpha-tubulin levels in the same lysate. The total or absolute protein levels were calculated by multiplying the specific Ucp1 protein level per mg homogenate protein with the total amount of homogenate protein as previously described25 (link).
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6

Histopathological Analysis of Adipose Tissue in Helminth-Infected Mice

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At necropsy, liver and fat tissues from helminth-infected, non-infected were collected, frozen in Tissue Tek OCT compound (Miles, Inc., Elkhart, IN) and stored at −80 °C. Ten-μm sections were cut on a Leica CM1850 Cryostat (Leica Biosystem) and were stained with hematoxylin and eosin or anti-UCP1 antibody. For the fat tissues, the samples from brown adipose, subcutaneous and gonadal adipose tissues were prepared. Using the histopathological approach, we examined the sizes of adipocytes from the various groups of mice that were fed with HFD or CD with and without H. polygyrus infection. Both brown and white adipose tissue sections were processed and UCP1 expression of adipose tissues was determined using immunohistochemical staining with anti-UCP1 antibody (ab10983, Abcam, Cambridge, MA, US).
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7

Histological Analysis of Liver, BAT, and WAT

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Liver, BAT and inguinal WAT sections were fixed with 10% formalin. Paraffin-embedded 7 μm sections were then stained with hematoxylin and eosin according to standard laboratory protocols. In WAT sections, Ucp1 staining was performed using UCP1 antibody (ab10983, Abcam) diluted to 1/500.
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8

Protein Analysis in Adipocytes

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Protein preparation, SDS-PAGE, and western blotting were performed as described 27 (link). Briefly, adipocytes treated with butein or siRNAs were harvested and lysed in RIPA buffer (1 % NP-40, 50 mM Tris-HCl, pH 7.4, 150 mM NaCl, and 10 mM NaF) containing a protease inhibitor cocktail (Roche Diagnostics). For tissue homogenates, white adipose tissues (100mg) were ground in liquid nitrogen and homogenized in RIPA buffer (200μl) supplemented with protease inhibitors (Roche Diagnostics). Homogenates were centrifuged for 10 min at 14,000 rpm at 4°C and supernatants collected. Protein lysates were separated on SDS-PAGE, transferred to PVDF membranes (Bio-Rad Laboratories), and western blot analysis was performed as described 27 (link). The membranes were blocked for 1 hour with 5% non-fat dry milk and incubated overnight at 4°C with primary antibodies against Prdm4 (1:2,000, ab156867, Abcam), Ucp1 (1:1,000, ab10983, Abcam), or actin (1:5,000, sc47778, Santa Cruz Biotech). The membranes were then probed with HRP-conjugated secondary antibodies (1:10,000, Ab Frontier) and developed by an enhanced chemiluminescent western blotting detection reagent (GE health care).
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9

Immunohistochemical Analysis of UCP1 in Mouse Adipose

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E-WAT from mice was perfused and fixed in 10% formalin saline, and then paraffin embedded. Paraffin-embedded sections were cut to 4 μM and the slides stained with hematoxylin and eosin. For uncoupling protein 1 (UCP1) staining, slides were deparaffinized, and antigen retrieval was carried out by heating sections to 95°C in sodium citrate buffer. Sections were blocked with goat serum before incubation with rabbit anti-UCP1 antibody (ab10983; Abcam Inc., Cambridge, United Kingdom) diluted 1:100. Following peroxidase blocking, horseradish peroxidase-conjugated goat anti-rabbit (P0448; Dako, Glostrup, Denmark) was used as the secondary antibody, and sections were incubated at 1:1000 in PBS for 1 h at room temperature. For staining, diaminobenzidine chromagen (K3468; Dako) was used according to the manufacturer’s instructions, and Mayer’s hematoxylin was used to counterstain.
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10

Immunolabeling of Dissociated Xenograft Cells

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Immediately after excision from mice, some of the tumors were fixed in 5% formalin overnight after which they were dehydrated in ethanol and embedded in paraffin. Tumor sections (5–6μm) were deparafinized, and immunolabeling was performed as described previously (21 (link)). Cells from dissociated HMLEHRASV12 xenografts (both transplantable and non-transplantable) were plated in six well plates and allowed to propagate for 48 hrs. Cells were fixed with 4% paraformaldehyde in 1× PBS for 30 min, washed, and incubated with blocking buffer (TBS pH 7.8, 5% normal goat serum, 1% BSA and 1% triton X-100) for 1hr. The following antibodies were used in our experiments: UCP1 (ab10983, Abcam), UCP2 (AB3226, Millipore, Billerica, MA); and UCP3 (ab3477, Abcam).
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