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47 protocols using nutridoma sp

1

Shear Stress Effects on Chondrosarcoma Cells

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Human cell lines derived from chondrosarcoma grade II (SW1353 and HS 819.T obtained from American Type Culture Collection, Manassas, VA, USA) and chondrosarcoma grade III (CH2879 kindly provided by Dr Judith Bovée) were grown (37°C in 5% CO2) on glass slides in the appropriate medium supplemented with 10% fetal bovine serum. Before exposure to fluid shear stress, cells were incubated for 18 h in serum-free medium supplemented with 1% Nutridoma-SP (Roche Applied Science; Indianapolis, IN, USA).18 (link),43 (link),44 (link) Cells were subjected to shear stress for up to 48 h in medium containing 1% Nutridoma-SP using a streamer gold flow device.19 (link),20 (link) In select experiments, pharmacological agents or blocking antibodies were added to the medium at the indicated concentrations just before the onset of shear or static exposure.
Transient transfection, quantitative real-time reverse transcription PCR, western blot and casein zymography assays were performed as previously described by Zhu et al.19 (link) and Wang et al.20 (link) IGF-2, VEGF-B and VEGF-D levels in static and sheared media were measured using enzyme immunoassay kits.
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2

THP-1 Macrophage Infection by M. avium with HDL

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The THP-1 cell line was obtained from ATCC (Manassas, VA) and maintained at 2–10 × 105 cells/mL in the RPMI 1640 medium (Sigma-Aldrich) supplemented with 10% heat-inactivated fetal bovine serum (Invitrogen), with a penicillin-streptomycin-L-glutamine solution (Wako), and 1x nonessential amino acids (GIBCO). The THP-1 cells were induced to differentiate into THP-1 macrophages by phorbol myristate acetate (PMA, Sigma-Aldrich) for 72 h. After washing with phosphate-buffered saline (PBS), the THP-1 macrophages were incubated in the serum-free RPMI 1640 supplemented with Nutridoma-SP (Roche) and then infected with M. avium (multiplicity of infection [MOI] 20 : 1) with or without HDL (50 μg protein/mL) for 24 h at 35°C in a humidified atmosphere containing 5% CO2.
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3

Recombinant Monoclonal Antibody Generation

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Mouse VH/Vk genes were PCR amplified from single-sorted memory B cells as described previously (Tiller et al., 2009 (link)). Recombinant mAbs were generated by transfecting both expression vectors into 293A cells (Invitrogen; Smith et al., 2009 (link)). In brief, the cells were grown to 80% confluency in 100-mm plates. Both expression vectors (3 µg each) were premixed with 50 µg polyethylenimine (Polysciences Inc.) and added to the cells. After 24-h incubation, the culture medium was replaced by a 50:50 mixture of RPMI/DMEM supplemented with antibiotic, 2 mM l-glutamine, and 1% Nutridoma-SP (Roche), and the medium was collected 4 d later. IgG1 Abs were purified from the culture supernatant using a protein G column (Thermo Fisher Scientific) and subjected to further analysis.
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4

Harnessing LL-37 for Serum-Free Expansion of hMSCs

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hMSCs isolated from bone marrow of healthy persons under informed consent were purchased from Lonza (Cologne, Germany). Each hMSC lot used in the study was tested by Lonza for purity and their ability to differentiate into the osteogenic, chondrogenic, and adipogenic lineage. The cells were positive for CD29, CD44, CD105, and CD166, and negative for CD14, CD34, and CD45. hMSCs were cultured as described previously,28 (link) using the StemMACS expansion media with a weekly medium change (Miltenyi Biotec, Bergisch Gladbach, Germany). All studies were carried out with hMSCs between the fifth and seventh passage of cultivation which exhibited an average cell doubling time of 96 h. For experiments under serum-free conditions, hMSCs were washed with serum-free medium and incubated in Dulbecco Modified Eagle Medium (DMEM) (PAA Laboratories, Coelbe, Germany) supplemented with 1% Nutridoma SP (Roche Applied Science, Mannheim, Germany) in the absence or presence of LL-37 (Anaspec, Fremont, CA, USA) at physiological concentrations of 10–100 ng/mL LL-37 as determined in human blood plasma.30 (link) Cells were routinely tested for mycoplasma contamination. Cell viability was determined by trypan blue staining and periodically by application of the WST-8 assay (Dojindo, Rockville, MD, USA).
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5

HIV p24 Antigen Expression and Purification

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DNA for HIV gag-p24 (aa 133–363 derived from HIV isolate BH10) was cloned in frame into the COOH terminus of the heavy chains of α–mouse-DEC205 as described previously (19 (link)). The fusion α–CD205-p24 mAb was produced by transient transfection (calcium phosphate) in 293T cells in serum-free DMEM supplemented with Nutridoma SP (Roche Applied Science). The mAbs were purified on protein G columns (GE Healthcare Bio-Sciences Corp.) and characterized by SDS/PAGE and Western blotting using α-mouse IgG1-HRP (Southern Biotech) or HRP-α-gag-p24 (ImmunoDiagnostics). mAb binding was verified on CHO cells stably transfected with the respective receptor by FACS using phycoerythrin-conjugated goat α-mouse IgG (Jackson ImmunoResearch). Unconjugated α–DEC-205 mAb expressed by stably transfected CHO cells was similarly purified. Recombinant NYVAC-encoding HIV BX08gp120-IIIBGag/Pol/Nef is a replication incompetent vector, kindly provided by Dr. Giuseppe Pantaleo (Centre Hospitalier Universitaire Vaudois (CHUV) Lausanne, Switzerland) and prepared as previously described (75 (link)).
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6

Filipin III Binding Kinetics in BV2 Cells

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BV2 WT and mutant cells were recovered by trypsinization and resuspended in DMEM-Ham F-12 (1:1) supplemented with 1% Nutridoma–SP (Roche 11011375,001; lipid free synthetic serum complement) at a concentration of 106 cells/mL. Filipin III (Merck F4767) binding kinetics (256 s) were performed on a LSR II UV flow cytometer (Becton Dickinson) equipped with a 355 nm UV laser line. Emitted fluorescence was filtered by a 450 nm+/−25 nm dichroic mirror. Filipin III (final concentration of 1 μg/mL) was added to the cells after a 60 s-recording of the natural fluorescence baseline. Cells were maintained in a 37°C water bath throughout the experiment.
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7

Oxidized LDL and Chemokine Effects on Macrophages

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Human peripheral blood was obtained from healthy volunteers with approval from the institutional review board as described previously.27 (link) Peripheral blood mononucleated cells were isolated from human peripheral blood using Histopaque (Sigma, Germany) following negative isolation with magnetic beads (Stem Cell, Canada), yielding >95% CD14+ monocytes. Cells were cultured in macrophage serum-free medium (Life Technologies, USA) supplemented with Nutridoma SP (Roche, Germany) and penicillin/streptomycin (Sigma, Germany) for 6 days in the presence of 100 ng/mL recombinant human macrophage colony-stimulating factor (Peprotech, USA). Macrophages were exposed to 15 μg/mL oxidized LDL (oxLDL) (Hycultec, Germany) in addition to 100 ng/mL CCL19 or 100 ng/mL CCL21 for 24 hours. The experiment was repeated five times. After washing the cells, we performed Oil Red O staining. For Oil Red O-staining analysis, we used the program ImageJ and the plugin colored convolution for ImageJ (National Institutes of Health). We measured the positively stained area in relation to the total area of the cells for each group. Untreated macrophages served as negative controls.
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8

Isolation and Characterization of Inflammatory Mediators

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Schneider’s insect medium, N-(1-naphthyl)-ethylenediamine and p-Aminobenzene-sulfanilamide were purchased from SIGMA (St. Louis, MO). RPMI 1640 medium and L-glutamine, penicillin, and streptomycin were from Invitrogen (Carlsbad, CA, USA). Nutridoma-SP was from Roche (Indianapolis, In, USA). A23187 calcium ionophore was from Calbiochem Novabiochem Corp. (La Jolla, CA). NS-398, PGE2 and LTB4 enzyme-linked immunoassay (EIA) Kits were from Cayman Chemical (Ann Arbor, MI). Dimethylsulfoxide (DMSO) was purchased from ACROS Organics (New Jersey, NJ).
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9

Siglec-Fc Production and Desialylation

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Siglec‐Fcs were produced as described in Padler‐Karavani et al. (2014). Siglec‐Fc vectors were transfected into HEK293A cells cultured in serum‐free media supplemented with Nutridoma‐SP (Roche). Culture supernatants were collected, and Siglec‐Fcs were purified on a Sepharose Protein A Column (GE Healthcare Life Sciences). After washing with Tris‐buffered saline (20 mM Tris–HCl, 150 mM NaCl, pH 8.0; TBS), Siglec‐Fcs were desialylated on column by neuraminidase from Arthrobacter ureafaciens (Sigma‐Aldrich) for 1 hr at room temperature. After extensive washing with TBS, Siglec‐Fcs were eluted with 0.1 M glycine–HCl pH 3.0 and pH is neutralized immediately. Siglec‐Fcs are concentrated by Amicon centrifugal filters (Millipore). The functionality of Siglec‐Fcs has been pretested on sialoglycan arrays.
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10

Murine Splenic T Cell Isolation

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Cell populations enriched for T lymphocytes from mice of the six experimental groups were obtained by nylon wool filtration of unfractionated splenic cell suspensions as previously described (Freire-de-Lima et al., 2000 (link)). T cells were cultured in DMEM supplemented with 2 mM glutamine, 5 × 10-5 M 2-Mercaptoethanol (2-ME), 10 μg/mL gentamicin, 1 mM sodium pyruvate, and 0.1 mM MEM non-essential amino acids (all from GibcoTM, Invitrogen Corporation) plus 1% Nutridoma-SP (Roche, Germany) instead of FBS (Nunes et al., 2013 (link)).
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