The largest database of trusted experimental protocols

6 protocols using anti cleaved caspase 1

1

Punicalagin Inhibits NLRP3 Inflammasome

Check if the same lab product or an alternative is used in the 5 most similar protocols
Punicalagin, the purity is 98%, purchased from Herbpurify Co., Ltd. (Chengdu, China). Anti-NLRP3, Anti-GSDMD, and Anti-GAPDH were purchased from Abcam (Cambridge, MA, USA). Anti-cleaved-caspase 1 and anti-ASC were purchased from Affinity Biosciences (Cincinnati, OH, USA).
+ Open protocol
+ Expand
2

Western Blot Analysis of NLRP3 Inflammasome

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell and tissue proteins were extracted as previously described (19 (link)), and bicinchoninic acid method was used to determine the protein concentration. Nitrocellulose membranes were incubated with primary antibodies (anti-NLRP3, anti-IL-18, GAPDH, Proteintech Group, Inc., Chicago, IL,USA; anti-GSDMD, Abbexa Ltd, Cambridge, United Kingdom; anti-caspase-1, anti-IL-1β, anti-cleaved caspase-1, anti-cleaved IL-1β, Affinity Biosciences, Cincinnati, OH, USA; anti-caspase-11 p20, Santa Cruz Biotechnology, Inc.Dallas, Texas, USA) at 4 °C overnight. The membranes were washed with 1% TBST before and after incubation with goat anti-rabbit IgG secondary antibody (LI-COR Biotechnology, Lincoln, NE, USA) or goat anti-mouse IgG secondary antibody (LI-COR Biotechnology, Lincoln, NE, USA) for 1 h at room temperature. Odyssey CLx imaging system (LI-COR Biosciences, Lincoln, NE, USA) was used to analysis protein expression as previously described (19 (link)).
+ Open protocol
+ Expand
3

Immunohistochemical Analysis of Lung Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical (IHC) staining of the paraffin-embedded lung tissues were performed according to standard protocols. The processed sections were incubated overnight at 4 °C with the following primary antibodies: anti-myeloperoxidase (MPO) (1:500; Cat# GB11224; Servicebio, Wuhan, China), anti-NLRP3 (1:400; Cat# ab214185; Abcam, Cambridge, UK), and anti-Cleaved caspase-1 (1:200, Cat# AF4022; Affinity, Cincinnati, OH, USA). Subsequently, the sections were incubated with the FITC-labeled secondary antibodies for 1 h at room temperature in the dark. Then, the IHC-stained sections were photographed using an optical microscope. The percentage of positive staining in each sample was estimated using the Image J software, by following steps: firstly, switched pictures to 8-bit image and also adjusted the contrast if necessary. Secondly, compared and adjusted the threshold of the pictures to make sure the positive areas were colored by red. Third, measure the areas of red color.
+ Open protocol
+ Expand
4

m6A RNA Dot Blot and Protein Immunoblotting

Check if the same lab product or an alternative is used in the 5 most similar protocols
Using the DynaBeads mRNA Purification Kit (ThermoFisher, Waltham, MA, USA), poly (A) RNA was purified from total RNA for dot blot. Poly(A) RNAs were diluted to concentrations of 250 ng/μl and 100 ng/μl. Each dilution was spotted twice (2 ul) on positively charged nylon membranes (Amersham Pharmacia, Piscataway, NJ, USA). The membranes with poly(A) RNAs were crosslinked using a Stratalinker 2400 Crosslinker. Then, the membranes were incubated for 5 min in wash buffer prior to 1-h blocking. The membranes were incubated in blocking buffer with diluted anti-m6A antibodies overnight at 4 °C. The levels of total m6A were detected using enhanced chemiluminescence after typical immunoblotting techniques including treatment with secondary antibodies.
WB was conventionally performed. The primary antibodies used were as follows: anti-IGF2BP1 (Proteintech, #22803-1-AP, Wuhan, China), anti-MIF (Proteintech, #20415-1-AP, Wuhan, China), anti-E2F1 (Abcam, #ab288369, Cambridge, UK), anti-NLRP3 (AdipoGen, #AG-20B-0014-C100, San Diego, USA), anti-Caspase1 (Cell signaling technology, #3866, Boston, Massachusetts, USA), anti-Cleaved-Caspase1 (Affinity, #AF4005, Jiangsu, China), anti-ASC (Affinity, #DF6304, Jiangsu, China), and anti-GAPDH (Abcam, #ab181602, Cambridge, UK).
+ Open protocol
+ Expand
5

Immunofluorescence Assay for VP1, Caspase-1 and NLRP3

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pre-cooled PBS was used to rinse the cells in 24-well plates (2 × 104 cells/well) for 3 times and 4% paraformaldehyde was employed to fix the cells deposited in plates of 24-well. After that, cells were subjected to permeabilization with PBS containing 0.1% Triton X-100 for 10 min at 37 °C. Then, 3% BSA was added for blockading the nonspecific binding. Next, the cells were incubated with the anti-VP1 (1:1000 dilution; Millipore, USA), anti-cleaved-Caspase1 (1:100 dilution; Affinity, USA) and anti-NLRP3 antibody (1:100 dilution; Affinity, USA) overnight at 4 °C, followed by incubation with fluorescein isothiocyanate (FITC)-conjugated donkey anti-mouse IgG and Daylight 594-conjugated donkey anti-rabbit IgG secondary antibodies (1:300 dilution; CST, USA) for 1 h. Finally, PBS was adopted to rinse the cells for 3 times and diamidino-2-phenylindole (DAPI; 1:1000 dilution; Beyotime, China) was taken to stain them at 37 °C for 5 min. With the help of a confocal fluorescence microscope (Leica, Germany), the images were obtained.
+ Open protocol
+ Expand
6

Quantitative Immunoblotting of Apoptotic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
A total of 1×106−107 cells were collected and lysed using RIPA lysis buffer on ice for 15–30 min and centrifuged at 4°C, at 12,000-14,000 × g for 10 min. The supernatant was collected, 1× Loading buffer was added, and the samples were denatured by heating in a metal bath at 100°C for 10 min and stored at −20°C for later use. Equal quantities of protein were loaded on a 12% SDS-gel (YESEN, China), resolved using SDS-PAGE, transferred to methanol-activated PVDF membranes, blocked with 5% skimmed milk for 15–30 min, and incubated with different primary antibodies at 4°C overnight. The following day, the membranes were washed and incubated with horseradish peroxidase-conjugated secondary antibody for 45–60 min at 25°C. Signals were visualized using an Immobilon Western Kit (MilliporeSigma). The antibodies used in this study were: Anti-GSDMD (1:2,000; cat. no. AF4012; Affinity Biosciences); Anti-Cleaved-Caspase-1 (1:2,000; cat. no. AF4005, Affinity Biosciences); anti-Caspase-1 (1:1,000; cat. no. ab138483; Abcam); anti-β-actin [1:2,000; cat. no. 30102ES60; Yeason Biotechnology (Shanghai) Co., Ltd.], and anti-rabbit mAb (1:4,000, cat. no. 5571S; Cell Signaling Technology, Inc.)
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!