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42 protocols using cyt c

1

Cytochrome C Immunofluorescence Imaging

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Cyt C immunofluorescence analysis was performed as previously described.23 (link) Adipocytes were fixed with 10% neutral formalin for 30 min, incubated with Cyt C (Abcam) for 12 h at 4 °C, and then incubated with fluorescein isothiocyanate-conjugated goat anti-rabbit IgG antibody (Boster, Wuhan, China) for 1 h at room temperature. Finally, the cells were photographed with an inverted fluorescent microscope (Nikon TE2000-U).
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2

Immunofluorescence Analysis of Mitochondrial Dynamics

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The cells were washed twice with PBS, permeabilized in 0.1% Triton X-100, neutralized with NH4Cl buffer and then per-meabilized using 0.05% saponin/PBS (pH 7.4) for 45 minutes. Subsequently, the samples were incubated overnight with the following primary antibodies: cyt-c (1:500; Abcam, #ab90529), Drp1 (1:1,000; Abcam, #ab56788) and Tom-20 (1:1,000; Abcam, #ab186735). Confocal immunofluorescence images were collected using the FV10-ASW 1.7 software and an Olympus IX81 microscope.24 The fluorescence intensity was calculated using the Image-Pro Plus 6.0 software. First, fluorescence pictures were converted to grayscale with the Image-Pro Plus 6.0 software. Then, the fluorescence intensities were separately recorded as the grayscale intensities. Mitochondria were observed in at least 100 cells, and the average length of the mitochondria was measured under an inverted microscope to quantify mitochondrial fragmentation (BX51; Olympus Corporation, Tokyo, Japan) as described in a previous study.25 (link) The experiments were performed in triplicate and repeated three times with similar results.26 (link)
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3

Cell Viability and Protein Analysis

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Cell counting kit-8 (CCK-8) was purchased from Sigma-Aldrich. BCA protein quantitative kit was purchased from Boster (Wuhan, China). Mouse Nrf2, HO-1, SMAC, Cyt-C, Lamin-B, and β-actin monoclonal antibodies were purchased from Abcam. HRP-labeled goat anti-mouse IgG antibody and goat anti-rabbit IgG antibody were purchased from Santa Cruz. Commercial kit for the determination of lactate dehydrogenase (LDH) cytotoxicity was purchased from Thermo Fisher Scientific. Western blot electrophoresis and exposure system were purchased from Bio-Rad (CA, USA) and the automatic microplate reader was purchased from Yongchuang Medical Instruments (Shanghai, China). The other facilities used in this study included cell culture plate (Corning, USA), ultra-clean workbench (Yatai Kelong Instrument, Beijing, China), centrifuge (Shanghai Lu Xiangyi Centrifuge Instrument, China), cell counting plate (Germany), and carbon dioxide incubator (USA).
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4

Immunofluorescence Analysis of Cellular Organelles

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HepG2 cells were fixed in 4% paraformaldehyde at room temperature for 30 min and then permeabilized using 0.05% Triton X-100 at 4 °C for 4 h [52 (link)]. Then, cells were washed with cold PBS to remove free Triton X-100. Subsequently, samples were incubated with primary antibodies at 4 °C overnight. The primary antibodies used in the present study were as follows: Cyt-c (1:500; Abcam; #ab90529), F-actin (1:500, Abcam, #ab205), p-JNK (1:500; Cell Signaling Technology, #9251) and Tom20 (1:500, Abcam, #ab186735). Tom20 was used to observe mitochondrial fission according to previous study [53 (link)]. Immunofluorescence was assessed under an Olympus IX81 microscope using FV10-ASW 1.7 software [54 (link)].
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5

Immunohistochemical Analysis of Cardiac Tissue

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Immunohistochemical staining was conducted on 4‐mm sections of heart tissue using Mff 1:500 (Abcam), phospho‐endothelial nitric oxide synthase (p‐eNOS; Ser1177) 1:200 (Abcam), intercellular adhesion molecule–1 1:500 (Abcam), vascular cell adhesion molecule–1 1:500 (Abcam), F4/80 1:500 (Abcam), and plasma albumin 1:500 (Abcam). The primary antibodies were as follows: CD31 (1:1500, Abcam), vascular endothelial cadherin (VE‐cadherin; 1:1000, Abcam), cyt‐c (1:500, Abcam), Mff (1:1000, Abcam), pDrp1 (1:500, Abcam), HK2 (1:500, Abcam), cleaved caspase3 (CL.caspase3; 1:1000, Abcam), and pro‐caspase3 (1:2000, Abcam). 4′,6‐Diamidino‐2‐phenylindole dihydrochloride (Sigma‐Aldrich, USA), lysosome stain, and a mitochondrion‐selective MitoFluor stain (Molecular Probes, USA) were used to marker the nuclear, lysosome, and mitochondria, respectively. For the cross‐linking of VDAC1, treated cells were harvested and added with dimethyl sulfoxide as a vehicle control (2%, as used in compound‐containing samples) or cross‐linked with 0.5 mm ethylene glycolbis (succinimidyl succinate) for 10 minutes at 30°C followed by 20 mm Tris‐HCl (pH 7.4) to quench the reaction. Samples were determined by SDS‐PAGE via immunoblotting.
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6

Antioxidant and Apoptosis Pathway Analysis

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AEE (99.5%) was prepared in Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS (Lanzhou, China). MS-gradeacetonitrile was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Formic Acid (98.0%, for LC-MS) was purchased from Tokyo Chemical Industry (Shanghai, China). Catalase assay kit was purchased from Solarbio (Beijing, China). Glutathione peroxidase (GPx), GSH and GSSG assay kit, superoxide dismutase (SOD), and malondialdehyde (MDA) assay kit were purchased from Beyotime (Shanghai, China). Caspase-3 assay kit was purchased from Jianglai Chemical Biotechnology (Shanghai, China). The antibodies of Caspase-9, Caspase-3, Bax, Bcl-2, Cyt C, AIF, and IgG were purchased from abcam (Shanghai, China). Alanine aminotransferase kit and aspartate aminotransferase kit were purchased from Mlbio (Shanghai, China).
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7

SADS-CoV Infection in Vero E6 and IPI-2I Cells

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Vero E6 cells and IPI-2I cells (porcine intestinal epithelial cells) were cultured in Dulbecco’s Minimal Essential Medium (DMEM; Invitrogen) with 10% fetal bovine serum (FBS; Invitrogen) and antibiotic-antimycotic solutions (100×; Invitrogen). The cells were maintained at 37°C in a humidified 5% CO2 incubator. The SADS-CoV was isolated from intestinal tract contents of SADS-CoV-infected piglets in Guangdong Province, China, and identified by physicochemical and neutralization testing and RT–PCR and sequence analyses [15 (link)]. SADS-CoV propagated in Vero E6 cells and virus titers was determined by 50% tissue culture infective doses (TCID50) as previously described [16 (link)]. Z-VAD-FMK (R&D Systems), Z-IETD-FMK (BD Pharmingen), Z-LEHD-FMK (BD Pharmingen), and cyclosporin A (CsA; Cell Signaling Technologies) were dissolved in dimethylsulfoxide (DMSO) and stored at −20°C. The SADS-CoV N protein-specific monoclonal antibody (mAb) was prepared by our laboratory [17 ]. Antibodies specific for caspase-3, -8 and -9 were obtained from Santa Cruz Biotechnology. The PARP, GAPDH, Fas, FasL, Bid, Bax, Cyt c, apoptosis-inducing factor (AIF), and prohibitin antibodies were purchased from Abcam.
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8

Immunofluorescence Staining of Organelles

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The cells were washed in PBS and permeabilized for 10 min at 4°C in a solution of 0.1% Triton X-100 and 0.1% sodium citrate in PBS. Cells were washed 3 times in PBS and incubated overnight at 4°C with the primary antibody (30 (link)). The primary antibodies used in the present study were as follows: Tomm20 (1:1,000, #ab78547), LAMP1 (1:1,000, #ab24170), F-actin (1:1,000, #ab205) and cyt-c (1:1,000, #ab133504) (all from Abcam, Cambridge, MA, USA), Sirt1 (1:500, #2310), Mfn2 (1:1,000, #11925) (both from Cell Signaling Technology, Inc., Danvers, MA, USA).
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9

Western Blot Analysis of SCI Markers

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The tissues (epicenter ± 0.5 cm) were homogenized and extracted using RIPA buffer (Beyotime, Jiangsu, China) with PMSF at 3 days after SCI. After measured by the bicinchoninic acid (BCA) assay, the protein (30 μg/lane) was firstly separated through 10 or 15% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred to 0.2 or 0.45 μm polyvinylidene fluoride (PVDF) membranes (Millipore, Bedford, MA, United States). After blocking for 1 h at room temperature with 5% skimmed milk, the membranes were incubated with the following primary antibodies against Cyt C (Abcam, United States), Bcl-2 (CST, United States), Bax (CST, United States), caspase-3 (CST, United States), cleaved caspase-3 (CST, United States), caspase-9 (CST, United States), cleaved caspase-9 (CST, United States), PARP (CST, United States), cleaved PARP (CST, United States) and β-actin (CST, United States) overnight at 4°C. After washing with tris buffered saline tween (TBST), the membranes were incubated with the goat anti-rabbit IgG-HRP or goat anti-mouse IgG-HRP secondary antibodies (Abcam, United States) for 2 h at room temperature. The membranes illuminated with enhanced chemiluminescence substrate (Millipore, Billerica, MA, United States) were photographed with Image Quant LAS 4000 (GE, United States) and analyzed by Image J software (NIH, Bethesda, MD, United States).
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10

Brain Region Protein Expression Analysis

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Mice were perfused with phosphate-buffered saline; brains were isolated and different regions were dissected and homogenized in PBS supplemented with complete protease inhibitor mixture (Roche) [13 (link)]. Protein concentrations were determined using the DC kit (Bio-Rad Laboratories). The homogenates were resolved on SDS-PAGE gels, transferred onto a polyvinylidene difluoride (PVDF) membrane, and hybridized with the antibodies raised against Cyt c (Abcam), Cox1 (Mitosciences), NDUFB8, SDHA, UQCRFS1/Rieske, VDAC1/Porin (Abcam); GFAP (Cell Signaling), TUJ1 (Chemicon), Bcl2, BAD, BAX (Cell Signaling); β-actin, γ-tubulin, vinculin (Sigma); SOD1, SOD2, GPX1 (Abgent).
Depending on the size of the related protein, bands were normalized for housekeeping gene (β-actin, γ-tubulin, vinculin) or for total protein loading (visualized by stain free technology, in the Chemidoc system, Biorad). As the same blots were used for hybridization of multiple antibodies, the following figures used the same loading control: hippocampus 4w (Bcl2 and TUJ1; SOD2 and GFAP), hippocampus 8w (Bcl2 and TUJ1; BAX and SOD2; BAD and GFAP), hippocampus 12w (Bcl2 and GFAP), cortex 4w (BAD, SOD2, and GFAP; Bcl2 and TUJ1), cortex 8w (BAX, SOD2, and GFAP; BAD and TUJ1; Bcl2 and GFAP), and cortex 12w (Bcl2 and GFAP).
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