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31 protocols using rabbit anti caspase 3

1

Neural Stem Cell Apoptosis Assay

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Cells Counting Kit-8 (CCK-8) and Annexin V-FITC Apoptosis Detection Kit were from Dojindo (Japan). Cells culture medium (DMEM/F12), B-27® Supplement without Vitamin A, and fetal bovine serum, were from Gibco (USA). Lactate Dehydrogenase (LDH) was from Beyotime (China). Epidermal Growth Factor (EGF), Fibroblast Growth Factor-basic (bFGF) were from PeproTech (USA).
The following antibodies were purchased as indicated: Rabbit anti-bcl-2 antibody, Mouse anti-bax antibody, Rabbit anti-caspase-3 and Rabbit anti-GAPDH polyclonal antibody were all from Abcam (USA). Rabbit anti-GABAA Rα was from Santa Cruz (USA). Bicuculline was from Sigma (USA).
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2

Western Blot Analysis of ER Stress Markers

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Sciatic nerves and RSC96 cells were lysed on ice in the RIPA buffer with protease inhibitor cocktail and phosphatase inhibitor cocktail for 30 min to extract total proteins. The proteins were analyzed with a bicinchoninic acid (BCA) protein assay kit (Biosynthesis, China). 30 μg/lane (sciatic nerve) and 20 μg/lane (RSC96 cell) were used for Western blot analysis as previously described8 (link),27 (link). The primary antibodies were as follows: mouse anti-IRE1α (sc-390960; 1: 1000; Santa Cruz), rabbit anti-P-IRE1α (ab48187; 1: 2000; abcam), mouse anti-XBP1 (sc-8015; 1: 1000; Abcam), mouse anti-GRP78 (sc-376768; 1: 1000; Santa Cruz), mouse anti-GADD153 (sc-7351; 1: 500; Santa Cruz), rabbit anti-Caspase-3 (ab13847; 1: 1000; abcam), rabbit anti-Caspase-12 (om273459; 1: 1000; Omnimabs), mouse anti-Bcl-2 (sc-7382; 1: 1000; Santa Cruz), mouse anti-Bax (sc-7480; 1: 1000; Santa Cruz), mouse anti-p-JNK (sc-6254; 1: 1000; Santa Cruz), and rabbit anti-PGP9.5 (ab108986; 1: 2000; Abcam). Mouse anti-β-actin (TA-09; 1: 20000; Zhongshan Goldenbridge) served as the internal control. The secondary antibodies were goat anti-mouse IgG-HRP (ZB-2305; Zhongshan Goldenbridge) and goat anti-rabbit IgG-HRP (ZB-2301; Zhongshan Goldenbridge). Western Chemiluminescent HRP Substrate and exposed to X-film to form image. The protein bands were quantitated with Image J software27 (link).
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3

Quantifying Autophagy and Apoptosis Markers

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To determine APN, LC-3, Beclin 1, Akt/P-Akt, P62, C-caspase-3/P-caspase-3 levels, proteins were extracted from the cells by suspension in radioimmunoprecipitation assay (RIPA) buffer. Samples were centrifuged at 12,000 rpm at 4°C for 30 min, and the supernatants were recovered for analysis. The protein concentrations were determined using the Bradford protein method and the bicinchoninic acid (BCA) protein assay kit (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany). Protein (40 µg) was electrophoresed on a pre-cast bis-Tris polyacrylamide gel (12%), and then transferred onto a polyvinylidene difluoride (PVDF) membrane. Membranes were blotted with rabbit anti-APN (1:1,000), rabbit anti-LC3B (1:500), rabbit anti-beclin 1 (1:1,000), rabbit anti-Akt (1:1,000), rabbit anti-p-Akt (1:1,000), rabbit anti-P62 (1:1,000), rabbit anti-Caspase-3 (1:1,000) (all from Abcam, Cambridge, MA, USA) and mouse anti-actin (1:1,000; ProteinTech Group, Inc., Chicago, IL, USA), followed by horseradish peroxidase (HRP)-conjugated secondary antibodies (1:5,000; ZsBio, Beijing, China). Immunoblots were visualized using enhanced chemiluminescence (LAS-4000).
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4

Protein Expression Analysis in Cells

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To determine APN, LC3B, JNK/P-JNK, Akt/P-Akt, P62, and cleaved-caspase-3/pro-caspase-3 levels, proteins were extracted from the cells by suspension in radioimmunoprecipitation assay buffer. Samples were centrifuged at 12,000 rpm at 4°C for 30 min, and the supernatants were recovered for analysis. The protein concentrations were determined using the Bradford protein method and the bicinchoninic acid protein assay kit (Sigma, St Louis, MO, USA). Protein (40 µg) was electrophoresed on a pre-cast bis-Tris polyacrylamide gel (8%~12%) and then transferred onto a polyvinylidene difluoride membrane. Membranes were blotted with rabbit anti-APN (1:1,000), rabbit anti-LC3B (1:500), rabbit anti-JNK (1:1,000), rabbit anti-p-JNK (1:1,000), rabbit anti-Akt (1:1,000), rabbit anti-p-Akt (1:1,000), mouse anti-P62 (1:1,000), rabbit anti-Caspase-3 (1:1,000) (all from Abcam, San Francisco, CA, USA), and mouse anti-actin (1:1,000; Proteintech, NY, USA), followed by horseradish peroxidase-conjugated secondary antibodies (1:5,000; ZsBio, Beijing, China). Immunoblots were visualized using enhanced chemiluminescence (LAS-4000).
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5

Immunohistochemistry of Drosophila Neural Tissues

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Brains were fixed 15 min at 4% paraformaldehyde in 0.1 M HEPES pH 7.4. Antibody staining was performed according to the reported methods (An et al., 2017 (link)). The primary antibodies, dilutions, and sources used in this assay were: rabbit anti-Dan/Danr 1/1000; guinea-pig anti-Dan/Danr 1/1000; mouse anti-Pros 1/10; mouse anti-Elav (44C11) 1/10; rabbit anti-Caspase-3 1/1000 (Abcam); guinea anti-Dpn 1/1000 (Y. Cai’s lab); rabbit anti-Ase 1/1000; rabbit anti-Grh 1/1000 (Y. Cai’s lab); mouse, rabbit and Chicken anti-GFP (Abcam) and rabbit anti-phospho-histone H3 (PH3) (Abcam). Secondary antibodies were conjugated to either Alexa Fluor 488, Alexa Fluor 555, or Alexa Fluor 633 (Molecular Probes), and used at 1/500, 1/1,000, or 1/250, respectively. TO-PRO-3 (Molecular Probes) at 1/5,000 was used for DNA staining and samples were mounted in Vectashield (Vector Laboratories). Images were obtained using OLMPUS upright microscope (FV-1000) and processed in Adobe Photoshop 2021. EdU incorporation was performed as per the kit instructions (Invitrogen).
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6

Cytotoxic Effects of Melittin in Cells

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Dulbecco’s modified Eagle’s medium, fetal bovine serum, and penicillin/streptomycin (100 IU/50 μg/ml) were obtained from Invitrogen (Grand Island, NY). Mellitin, H2O2, 3-(4,5-dimethylthizaol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), dimethyl sulfoxide, 4′, 6-diamidino-2-phenylindole (DAPI), 2′,7′-dichlorofluorescein diacetate, rabbit anti-Bax, rabbit anti-Bcl-2, and rabbit anti-caspase-3 were purchased from Abcam (Cambridge, MA). Anti-rabbit horseradish peroxidase-linked IgG antibodies were purchased from GE Healthcare Life Science (Buckinghamshire, England, UK). All other chemicals were of analytical grade.
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7

Western Blot Analysis of Protein Expression

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Each protein extract was adjusted to a 2 μg/μL concentration with the addition of Laemmli sample buffer (4X concentrate, Bio-Rad, Hercules, CA, USA), heated for 5 min at 95 °C, and separated on precast polyacrylamide gradient gels (7.5–15%). After transfer to 0.2 μm polyvinylidene difluoride membranes (PVDF, Bio-Rad), the membranes were blocked in either 5% (w/v) nonfat dried milk or 1% (w/v) bovine serum albumin (BSA) (Sigma-Aldrich, Saint Louis, MO, USA) diluted in Tris-buffered saline containing 0.1% (v/v) Tween 20 (TBS-T), and probed overnight at 4 °C with the respective primary antibodies, as follows: mouse anti-actin (1:2500), rabbit anti-LDHA (1:1000), rabbit anti-microtubule-associated protein 1B/2B light chains 3B (MAP-LC3) (1:1000) (Cell Signaling Technology, Danvers, MA, USA), rabbit anti-HIF-1α (1:250), rabbit anti-PDK1 (1:1000), rabbit anti-Bax (1:1000), rabbit anti-Bcl-2 (1:500), and rabbit anti-caspase 3 (1:250) (Abcam, Cambridge, UK). Membranes were subsequently incubated with the respective HRP-linked anti-rabbit or anti-mouse IgG (1:1000) (Cell Signaling Technology, Danvers, MA, USA) antibodies and developed using ECL or ECL Plus (WesternBright Sirius Chemiluminescent Detection Kit, Advansta Inc., USA). Detection and densitometric quantification of band intensities was performed using a G-Box system (Syngene, Cambridge, UK).
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8

Immunostaining and H&E Staining Protocol

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Immunostaining and Haematoxylin and Eosin (H&E) staining were performed as described previously (Inoue and Wittbrodt, 2011 (link)), using the following primary antibodies (all at 1:500): chicken anti-EGFP (Life Technologies, A10262), rabbit anti-phospho H3 (Upstate Biotechnology, 06-570) and rabbit anti-caspase 3 (Abcam, ab13847). Nuclear DNA was stained with DAPI (Sigma, D9564) or DRAQ5 (Thermo Fisher Scientific, 62251; Smith et al., 2004 (link)).
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9

Quantitative Analysis of Caspase-3 Levels

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Western blot analysis was performed as described previously for evaluating the levels of Caspase-3 proteins (18 (link)). The samples (20 µg protein), as determined by using a bicinchoninic acid assay (Abcam), were separated by 10% SDS-PAGE and transferred to a nitrocellulose membrane. Membranes were probed with the following primary antibodies: Rabbit anti-Caspase-3 (cat no. ab4051; 1:500; Abcam) antibody. GAPDH (cat no. G5262; 1:6,000; Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) was used as a loading control. Following incubation with the primary antibodies for 1 h at room temperature, membranes were washed with TBS + 5% Tween-20 (TBST) and incubated with appropriate horseradish peroxidase-labeled secondary antibodies (cat no. sc2357; 1:1,000; Santa Cruz Biotechnology, Inc., Dallas, TX, USA) for 1 h at room temperature in 1% nonfat milk in TBST for 1 h at room temperature. Following two rinses and four washes with PBST, membranes were incubated with Enhanced Chemiluminescence Western Blotting Detection Reagent (GE Healthcare Life Sciences, Shanghai, China) for 60 sec and exposed to autoradiography film for visualization of the bands. Results were quantified by Quantity One version 4.5 software (Bio-Rad Laboratories, Hercules, CA, USA). A total of 8 rabbits from each group were used.
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10

Immunodetection of Key Cellular Proteins

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Goat anti-PRPF31 primary antibody 1:200 (Abnova).
Mouse anti-c myc 1:1000 (Sigma).
Rabbit anti-caspase 3 1:500 (Abcam).
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