The largest database of trusted experimental protocols

5 protocols using fast sybr green master kit

1

Measuring Bim Gene Expression in Caco-2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Caco-2 cells were seeded into 10-cm petri dishes (2 × 106 cell/well). After attachment, cells were pretreated with 10 mM NAC for 1 h to increase the GSH level before treatment with RM4819 (20 μM) or DMSO (0.1%) for further 8 h. Cells were harvested, lysed in PeqGOLD TriFast (PeqLab, Erlangen, Germany) RNA isolation reagent and RNA was isolated according to the manufacturer's protocol. One microgram of RNA was reverse transcribed and cDNAs were used for quantification of gene expression by quantitative PCR using FASTSYBR Green Master Kit and a StepOnePlus Real time PCR system (Applied Biosystems, Foster City, CA, USA). The following primers were used: human Bim forward 5′-ATG AGA AGA TCC TCC CTG CT-3′ and reverse 5′-AAT GCA TTC TCC ACA CCA GG-3′, GAPDH forward 5′-ATG GAG AAG GCT GGG GCT CA-3′ and reverse 5′-AGT GAT GGC ATG GAC TGT GGT CAT-3′ to normalize the gene expression by GAPDH expression levels.
+ Open protocol
+ Expand
2

RNA Isolation and Quantitative PCR Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
For RNA isolation cells were lysed in 1 ml peqGOLD TriFast reagent (PeqLab, Erlangen, Germany). Tissue samples were homogenized in 1 ml TriFast using the TissueLyser II (Quiagen, Hilden, Germany). RNA was isolated according to the manufacturers protocol. One microgram of RNA was reverse transcribed using a High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, USA) and cDNAs were used for quantification of gene expression by quantitative PCR using FAST SYBR Green Master Kit and a StepOnePlus Real-time PCR system (Applied Biosystems) with primers stated in Table 1.
+ Open protocol
+ Expand
3

Quantitative Real-Time PCR for Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was obtained, and reverse transcription was performed as previously described.30 cDNA synthesis was performed with RevertAid First Strand cDNA synthesis Kit (Thermo Scientific) following manufacturer's protocol in an iCycler thermal cycler (Biorad). Real‐time PCR was performed with Fast SYBR Green Master kit (Thermo Scientific) in a 7500 Fast Real‐Time PCR instrument (Applied Biosystems). The PCR conditions were performed as previously described.30 Primers were designed by using the NCBI BLAST software and purchased from Sigma‐Aldrich. Primers sequences used are as follows: ERK5 forward 5′‐AGCACTTTAAACACGACAAC‐3′; ERK5 reverse 5′‐ TAGACAGATTTGAATTCGCC‐3; GAPDH forward 5′‐TCGTGGAAGGACTCATGACCA‐3′; GAPDH reverse 5′‐CAGTCTTCTGGGTGGCAGTGA‐3′.
+ Open protocol
+ Expand
4

RNA Extraction and qPCR Analysis of p62/SQSTM1

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA from was extracted with RNeasy Mini Kit (Qiagen). cDNA synthesis was performed with RevertAid First Strand cDNA synthesis Kit (Thermo Scientific) following the manufacturer’s protocol. Real-time PCR was performed with Fast SYBR Green Master kit (Thermo Scientific) in a 7500 Fast Real-Time PCR instrument (Applied Biosystems). Primer sequences used are as follows: p62/SQSTM1 F: 5’-CAGTCCCTACAGATGCCAGA-3’, p62/SQSTM1 RV: 5’-TCTGGGAGAGGGACTCAATC-3’; GAPDH F: 5’-TCGTGGAAGGACTCATGACCA-3’; GAPDH RV: 5’-CAGTCTTCTGGGTGGCAGTGA-3.
+ Open protocol
+ Expand
5

Quantitative RT-PCR Protocol for Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was obtained as previously described [53] (link). cDNA synthesis was performed with RevertAid First Strand cDNA synthesis Kit (Thermo Scientific) following manufacturer’s protocol in an iCycler thermal cycler (Biorad). Real time PCR was performed with Fast SYBR Green Master kit (Thermo Scientific) in a 7500 Fast Real-Time PCR instrument (Applied Byosystems). PCR conditions were as previously described [53] (link). Primers for all target sequences were designed by using NCBI BLAST software and purchased from Merck as DNA oligos. Primer sequences can be found in Supplementary Table S1. Data shown are the average of, at least, three independent experiments performed in triplicate.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!