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1

Western Blotting Quantification and Antibody Detection

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Western blotting was performed as previously (18 , 19 (link)) and visualized and quantified using a Fluor-S Multi-Imager with Multi-Analyst software (Bio-Rad, Hercules, CA, USA). We utilized a rabbit anti-Ctsk antibody previously generated in our lab (11 (link)) and a goat anti-rabbit IgG-HRP (7074S, Cell signaling, Danvers, MA, USA) for this Western analysis.
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2

Western Blot Analysis of Cell Lysates

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Cells were lysed on ice for 30 min using RIPA buffer followed by high-speed centrifugation. Afterwards, total cell protein concentration was determined using a BCA Protein Assay Kit (Thermo Fisher Scientific, USA). After blocking, membranes were incubated with antibodies against the desired primary antibodies including Ki67 (ab16667, abcam, USA), E-cadherin (ab40772, abcam, USA), N-cadherin (ab245117, abcam, USA), and GAPDH (10494-1-AP, proteintech, USA). Bands were visualized using enhanced chemiluminescence reagents (NCM, USA) and analyzed using a gel documentation system (Bio-Rad Gel Doc1000 and Multi-Analyst version 1.1). Relative band intensity was determined by densitometry software and normalized with GAPDH protein.
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3

Protein Expression Analysis Workflow

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Cells were lysed on ice for 30 min with lysis buffer. Total cell protein concentration was determined using a BCA Protein Assay Kit. The total protein (30 μg) was resolved using sodium dodecyl sulfate-polyacrylamide gel electrophoresis (Invitrogen) and transferred to a polyvinylidene fluoride membrane (Roche). Membranes were blocked with 5% bovine serum albumin in TBS-Tween (0.1%) and incubated against the desired antibodies. The primary antibodies BAX (5023, Cell Signaling Technology, USA), BCL-2 (ab196495, abcam, USA), p53 (21083, Signalway Antibody, USA), AMP-activated protein kinase (AMPK, 5831, Cell Signaling Technology), phosphorylation of AMPK (p-AMPK, 500815, Cell Signaling Technology), XIAP (14334, Cell Signaling Technology), GAPDH (5174, Cell Signaling Technology), TSG101 (14497, Proteintech, United States), CD63 (25682, Proteintech), CD81 (66866, Proteintech), and horseradish peroxidase-conjugated secondary antibody (Santa Cruz) were used. Bands were visualized using enhanced chemiluminescence reagents and analyzed using a gel documentation system (Bio-Rad Gel Doc1000 and Multi-Analyst version 1.1).
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4

Protein Extraction and Western Blot Analysis

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Protein extraction and western blot (WB) analysis were performed as previously described [14 (link)]. Briefly, cells were washed with PBS and lysed with lysis buffer on ice for 20 min. The total cell protein concentration was detected using the BCA Protein Assay Kit. The total protein (20 μg) was separated using SDS-PAGE (Invitrogen) and transferred to a PVDF membrane (Roche). The membrane was blocked with 5% bovine serum albumin (0.1%) in TBS-Tween and incubated against the required antibody.
The primary antibodies Bax (5023, Cell Signaling Technology, USA), Bcl2 (ab196495, Abcam, USA), cleaved caspase-3 (29034, Signalway Antibody, USA), BTG2 (A9848, ABclonal), GAPDH (5174, Cell Signaling Technology), TSG101 (14497, Proteintech, United States), CD63 (25682, Proteintech), CD81 (66866, Proteintech), and horseradish peroxidase-conjugated secondary antibody (Santa Cruz) were used. Bands were visualized using enhanced chemiluminescence reagents and analyzed using a gel documentation system (Bio-Rad Gel Doc1000 and Multi-Analyst version 1.1).
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5

PAK1 Kinase Activity Assay

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Cells were treated with vehicle, PRL (200 ng/ml, 20min), E2 (1 nM, 30min) or PRL+E2 (25 min) and cell fractionation was performed as described above. HA-PAK1 was immunoprecipitated from the cytosolic fraction and the nuclear fraction (a combination of soluble and insoluble nuclear fractions) with αHA Ab, and subjected to an in vitro kinase assay in the presence of 10 μCi of [γ-32P]ATP and histone H4 (substrate of PAK1). Relative levels of incorporation of 32P into histone H4, an indicator of phosphorylation, were assessed by autoradiography and estimated by a phosphoimager. The same membrane was blotted with αHA to assess the amount of PAK1 for each condition. Membrane patterns were scanned and the amount of PAK1 was quantified using Multi-Analyst (Bio-Rad) software. Relative PAK1 kinase activity was then normalized by the amount of immunoprecipitated PAK1 for each lane. Each experiment was performed at least three times with similar results.
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6

Western Blot Analysis of mTOR

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Tissues were lysed for 30 minutes at 4°C in RIPA lysis buffer (P0013B, Beyotime, Shanghai, China). Total protein concentration was determined using bicinchoninic acid reagent. Then 50 μg of total protein was resolved by sodium dodecyl sulfate–polyacrylamide gel electrophoresis, transferred to a polyvinylidene fluoride membrane, and subjected to immunoblot analysis. The membranes were incubated with primary antibodies followed by incubation with horseradish peroxidase–conjugated secondary antibody (1:5000 dilution, Santa Cruz). Primary antibodies for Western blot are summarized in Table S1. The bands were visualized using enhanced chemiluminescence reagents and analyzed with a gel documentation system (Bio‐Rad Gel Doc1000 and Multi‐Analyst version 1.1). After visualizing the band of mammalian target of rapamycin (mTOR), the membrane was incubated by stripping buffer (P0025B; Beyotime, Shanghai, China) to wash out antibodies, blocked and incubated with a rabbit anti‐mTOR (7C10) monoclonal antibody.
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7

Protein Extraction and Western Blot Analysis

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Protein extraction and Western blot (WB) analysis were performed as previously stated. 14 (link) Brie y, cells were washed with PBS and lysed with lysis buffer on ice for 20 minutes. The total cell protein concentration was detected by the BCA Protein Assay Kit. The total protein (20μg) was separated using SDS-PAGE (Invitrogen) and transferred to a PVDF membrane (Roche). The membrane was blocked with 5% bovine serum albumin (0.1%) in TBS-Tween and incubated against the desired antibody. The primary antibodies used for Western blot analysis are listed in Table S2. Bands were visualized using enhanced chemiluminescence reagents and analyzed using a gel documentation system (Bio-Rad Gel Doc1000 and Multi-Analyst version 1.1).
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