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20 protocols using bay11 7082

1

Modulation of CD20 Expression

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TK and KML‐1 cells were pre‐treated with BAY 11‐7082 (0.3, 1 μM) (Wako) for 1 h, and subsequently treated with GEM (1000 ng/mL) and BAY 11‐7082 for 48 h. Expression of CD20mRNA and CD20 protein was assayed by qRT‐PCR and flow cytometry, respectively, as described above.
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2

Extraction and Evaluation of Bioactive Compounds from Shokyo and Kankyo

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Powders of shokyo and kankyo were provided by Tsumura & Co. 3-D HPLC profiles of shokyo and kankyo were shown in Fig. S1. These powders were suspended in Dulbecco’s modified Eagle’s medium (D-MEM, Wako, Osaka, Japan) containing 10% heat-inactivated fetal calf serum, 100 units/ml of penicillin, and 100 mg/ml of streptomycin (culture medium), and were rotated at 4 °C overnight. Then, the suspensions were centrifuged and the supernatants were filtered through a 0.45 µm pore membrane. Lipopolysaccharide (LPS) from Porphyromonas gingivalis 381 was provided by Professor Nobuhiro Hanada (School of Dental Medicine, Tsurumi University, Japan). Arachidonic acid and 6-shogaol were purchased from Cayman Chemical (Ann Arbor, MI, USA). NF-κB inhibitor, BAY 11-7082, was purchased from Wako. Mitogen-activated protein kinase kinase (MAPKK/MEK) inhibitor, PD98059, were purchased from Sigma (St. Louis, MO). Other reagents were purchased from Nacalai Tesque.
The mouse macrophage cell line RAW264.7 (RIKEN BioResource Research Center, Tsukuba, Japan) was cultured in culture medium at 37 °C in a humidified atmosphere of 5% CO2.
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3

Inhibiting NF-κB Modulates LPS-Induced NO

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RAW264 cells were pretreated with AL4W-1b extract for 24 h and treated with or without BAY 11-7082 (WAKO Pure Chemical), an NF-κB inhibitor, at 10 μM before treatment with LPS. After 12 h of treatment with LPS, NO production was measured.
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4

Regulation of Epithelial-Mesenchymal Transition

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Recombinant soluble human TGF-β1 and TWEAK were from Peprotech (Rocky Hill, NJ, USA). Recombinant soluble human TNF-α was obtained from eBioscience (San Diego, CA, USA). Purified anti-α-tublin and anti-human Vimentin (V9) monoclonal antibodies (mAbs) SB431542 and AG1478 were from Sigma Chemicals (St. Louis, MO, USA). Anti-human E-cadherin (HECD-1) was from Takara (Tokyo, Japan). N-cadherin and anti-EGFR mAbs were from BD Biosciences (San Jose, CA, USA). Anti-phospho-EGFR (pY845) mAbs was from abcam (Cambridge, UK). Anti-Smad2/3, anti-phospho-Smad2 (Ser465/467), anti-extracellular signal-regulated kinase (ERK), anti-phospho-ERK (Thr202/Tyr204), anti-p38 MAPK, anti-phospho-p38 MAPK (Thr180/Tyr182), anti-Akt, anti-phospho-NF-κB p65 (Ser536) polyclonal antibodies, and anti-ZO-1, anti- Jun N-terminal kinase (JNK), anti-phospho-JNK (Thr183/Tyr185), anti-phospho-Akt (Ser473), and anti-NF-κB mAbs were obtained from Cell Signaling Technology (Beverly, MA, USA). SB202190, SP600125, LY294002, and BAY11-7082 were from Wako Chemicals (Osaka, Japan). AZD6244 was from Selleckchem (Houston, TX, USA). Bronchial epithelial growth medium (BEGM) was purchased from Cambrex (East Rutherford, NJ, USA).
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5

Pharmacological Modulation of Tumor Microenvironment

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5-FU (Kyowa Hakko, Tokyo, Japan) was administered to mice intraperitoneally (i.p.) at a dose of 150 mg/kg either as a single dose or once every 7 days two times. Recombinant Ang-1, Thpo and CXCL12 were purchased from R&D Systems (Minneapolis, MN) and diluted with phosphate-buffer saline (PBS). The pharmacological inhibitors PD98059 and LY294002 were purchased from Merck Millipore (Darmstadt, Germany) and diluted with dimethyl sulfoxide (DMSO; Wako, Osaka, Japan). The NF-κB inhibitor BAY-11-7082 (Wako) was reconstituted in DMSO (Wako) as a 10 mM stock solution and diluted with PBS. In animal experiments, BAY-11-7082 was administered i.p. at a dose of 10 mg/kg and mice were sacrificed after 12 h. The Sp1 inhibitor Mithramycin A (MIT) was purchased from Cayman Chemical (Ann Arbor, MI) and diluted with ethanol (Wako). Tolfenamic Acid (TA) was purchased from Wako and mixed with corn oil (Sigma, St. Louis, MO). MIT was administered i.p. once every 2 days, and TA was administered via oral gavage also once every 2 days. Verapamil was purchased from Eisai (Tokyo, Japan) and diluted with sterile water. LPS (Escherichia coli 055:B5) was purchased from FUJIFILM (Osaka, Japan) and diluted with PBS. LPS injections were administered intravenously (i.v.) at a dose of 250 µg/kg.
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6

RAW264.7 Cell Stimulation Assay

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Mouse monocyte/macrophage cell line, RAW264.7 (TIB-71, ATCC), were cultured in RPMI1640 medium (Life Technologies) supplemented with 10% fetal bovine serum (FBS: HyClone) and antibiotics. Cells were stimulated with LPS (1 to 1000 ng/ml) for the indicated time. In some experiments, cells were pretreated with the Rac1 inhibitor EHT1864 (Tocris), the NF-κB inhibitor BAY11-7082 (Wako Pure Chemical Industries), or the NADPH oxidase inhibitor diphenyleneiodonium (DPI: Sigma) for 2 h, then subjected to LPS. EHT1864 associates with Rac1 tightly and causes the release of bound GTP, thus prevents effector interaction.[31 (link)] BAY11-7082 is an irreversible inhibitor of IκB kinase α and phosphorylation of cytokine-inducible IκBα, thus inactivates NF-κB. DPI, an inhibitor of flavoenzymes, blocks NADPH oxidase activity.
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7

EBV Latency Cell Culture Protocol

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Cells were maintained in RPMI-1640 medium (Wako Pure Chemical Industries, Osaka, Japan) supplemented with 10% FBS (Japan Bioserum, Tokyo, Japan), 100 U/mL penicillin, and 100 mg/mL streptomycin (Wako Pure Chemical Industries), at 37°C in a humidified 5% CO2 atmosphere. Cells and their types of EBV latency are summarized in Table 1. The inhibitor of IκB phosphorylation, BAY 11-7082, was also purchased from Wako Pure Chemical Industries.
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8

Immunoblotting Reagents for NF-κB Pathway

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The NF‐κB inhibitor Bay11‐7082 was purchased from Wako Pure Chemical Industries (Osaka, Japan). The anti‐CD54/ICAM‐1 antibody (#4915) and anti‐RIG‐I (#4200) antibodies were purchased from Cell Signaling Technology (Tokyo, Japan); the anti‐Fas (sc‐74540) antibody was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). The anti‐MAVS antibody (ab25084) was purchased from Abcam (Cambridge, UK), and the anti‐β‐actin (AC‐15) antibody (A5441) was purchased from Sigma‐Aldrich (Tokyo, Japan).
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9

Investigating Synergistic Therapeutic Combinations

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Gemcitabine (GEM) was purchased from Eli Lilly Japan (Kobe, Japan). Lenalidomide (LEN) was purchased from Toronto Research Chemicals (Toronto, Canada). Azacitidine (AZA) was purchased from Sigma‐Aldrich (St. Louis, MO, USA). BAY 11‐7082, a nuclear factor‐kappa B (NF‐kB) inhibitor, was purchased from Wako Pure Chemical Industries. Rituximab was a gift from Zenyaku Kogyo (Tokyo, Japan).
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10

Multiparametric Analysis of Immune Cells

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Fluorescein isothiocyanate (FITC)-conjugated anti-F4/80 (clone BM8), FITC-conjugated CD19 (clone 6D5), phycoerythrin (PE)-conjugated anti-Ly-6G (clone 1A8), biotin-conjugated anti-NK1.1 (clone PK136), peridinin chlorophyll protein/Cy5.5 (PerCP/Cy5.5)-conjugated anti-CD45 (clone 30-F11), and phycoerythrin-Cy7 (PC7)-conjugated anti-CD3ε (clone 145-2C11) monoclonal antibodies were purchased from Biolegend (San Diego, CA). LPS from Escherichia coli 0111:B4, poly I:C, and 2-DG were purchased from Sigma-Aldrich (St. Louis, MO). Imiquimod (R837) was purchased from Invivogen (San Diego, CA). Oligomycin was purchased from Merck Millipore (Billerica, MA). AICAR was purchased from Cell Signaling Technology (Danvers, MA). BAY 11-7082 was purchased from Wako Pure Chemical Industries (Osaka, Japan).
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