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11 protocols using sds page gel preparation kit

1

Almond Protein Extraction and Analysis

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The stone almonds were purchased from the almond farm in Shache County, Kashgar Prefecture (Xinjiang, China), and the harvest date was usually around August 20. Almond ELISA kit (EKT-A10) was purchased from Qingdao Pribolab Bioengineering Co. (Qingdao, China). EGCG, ascorbic acid, Folin–Ciocalteu reagent, Ellman reagent, ortho-phthaldialdehyde (OPA), bromophenol blue, and potassium bromide were purchased from Shanghai Aladdin Biochemical Technology Co., Ltd (Shanghai, China). SDS-PAGE gel preparation kit, loading buffer, and Coomassie Brilliant Blue rapid dyeing solution were purchased from Beijing Solarbio Technology Co., Ltd (Beijing, China). Other analytical reagents were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). All solutions were prepared with deionized water.
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2

Comprehensive Molecular Analysis of BDE-209 Exposure

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The following reagents were used in this study: BDE-209 (98% purity; Yuanye Chemical Co., Ltd., Shanghai, China); blood glucose test paper (Bayer, Leverkusen, Germany); mouse fasting insulin (FINS), LEP, and Adp enzyme-linked immunosorbent assay (ELISA) kits (Jianglai Biotechnology Company, Shanghai, China); RevertAid First Strand complementary deoxyribonucleic acid Synthesis Kit (Thermo Fisher Scientific, Waltham, MA, United States); QuantiNova SYBR Green polymerase chain (PCR) reaction Kit (Qijie Enterprise Management Co., Ltd., Shanghai, China); LEP, Adp, PPARγ, and β-actin primers (Shenggong Technology Company, Shanghai, China); sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel preparation kit, high efficiency radioimmunoprecipitation assay (RIPA) lysis solution, and protein quantification kit (Solarbio, Beijing, China); and rabbit anti-LEP, anti-Adp, and anti-PPARγ polyclonal antibodies (Ab-cam, Cambridge, United Kingdom).
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3

Comprehensive Protein Analysis Protocol

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The main reagents used in this study included TRIzol lysis buffer (Invitrogen, USA); reverse transcription kit: PrimeScript RT reagent kit with GDNA Eraser (RR 047A, Takara, Japan); qPCR kit: Tb Green Premix EX TAQ II (RR 820A, Takara); animal whole protein extraction kit (C510003, Sangon Biotech, China); BCA protein concentration assay kit (P0010, Beyotime Biotech, China); 5× loading buffer (P0015, Beyotime Biotech); SDS-PAGE gel preparation kit (P1200, Solar BioBeijing, China); SDS-PAGE electrophoresis solution (P00148, Beyotime Biotech); 10× EMT (D1060, Solar BioBeijing); methanol (CB/T693-1993, Shanghai Guangnuo Chemical Technology Co., Ltd., China); skimmed milk powder (D8340, Solar BioBeijing); 10×TBST buffer (powder) (T1087, Solar BioBeijing); nitrocellulose membrane (NC membrane) (37412133, PALL, USA); and ECL developer (34095, Thermo Fisher, USA).
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4

Examining TGF-β1 and mTOR Signaling Pathways

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D-Hank's liquid (Shanghai Kang Lang Biological Technology Co., Ltd., Shanghai, China), 0.25% trypsin (Shanghai Bioleaf Biotech Co., Ltd., Shanghai, China), fetal bovine serum (Shanghai Bioleaf Biotech Co., Ltd.), Triton X-100 (Shanghai Lianshuo Biological Technology Co., Ltd., Shanghai, China), reverse transcription kit superscript III (Invitrogen, Carlsbad, CA, USA), SDS-PAGE gel preparation kit (Shanghai Solarbio Bioscience & Technology Co., Ltd., Shanghai, China), rabbit anti-human TGF-β1 monoclonal antibody (Wuhan Boster Biological Technology Co., Ltd., Wuhan, China), rabbit anti-human monoclonal antibody (Wuhan Boster Biological Technology Co., Ltd.), rabbit anti-human protein kinase B (Akt) monoclonal antibody (Wuhan Boster Biological Technology Co., Ltd.); rabbit anti-human mTOR monoclonal antibody (Wuhan Boster Biological Technology Co., Ltd.), and goat anti-rabbit secondary antibody (Jackson ImmunoResearch Inc., West Grove, PA, USA) labeled by fluorescein isothiocyanate were used in the study.
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5

Apricot Kernel Amygdalin Extraction Protocol

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Apricot kernels were purchased from the Northwest Herb Market in the city of Xi'an (Shaanxi Province, China). The water content of the apricot kernels is about 4.84 g water/100 g seeds. The beta-glucosidase activity assay kit, BCA protein assay kit (50 T) and SDS-PAGE gel preparation kit were all purchased from Solarbio Co. Ltd. (Beijing, China). Amygdalin (98.42% pure) was purchased from Chengdu Preferred Bio-Technology Co. Ltd (Chengdu, Sichuan Province, China). HPLC-grade methanol (99.9% pure) was bought from Thermo Fisher Scientific Co. Ltd (Shanghai, China). All other reagents were of analytical grade, including sodium hydroxide, sodium carbonate, glycerol, bovine serum protein, G-250, 3,5-dinitrosalicylic acid, glucose, hydrochloric acid, Folin–Ciocalteu reagent, and sodium chloride. These reagents were purchased from Tianli Chemical Reagent Co. Ltd (Tianjin, China). Ultrapure water was prepared using a Millipore Milli-Q purification system.
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6

Western Blot Analysis of Protein Samples

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First the total cell protein was extracted and its concentration was measured. The gel was prepared according to the instructions of Solarbio’s SDS-PAGE gel preparation kit, and protocols for (i) loading (15 μL per well), (ii) electrophoresis (in the concentrated gel, apply constant voltage modulation 80V, run for 30 minutes; once the marker is separated, adjust the voltage to 120V for 60 minutes), (iii) transferring of the membrane (a sponge pad, 3 layers of filter paper, gel plate, PVDF membrane, 3 layers of filter paper, a sponge pad from the negative plate should be put on the positive plate; the constant current of 300 mA at 4 °C for 150 min should be applied), (iv) blocking (TBST solution containing 5% skim milk), (v) incubation of primary antibody (Anti-B4GALNT2-Sigma-HPA015721; Anti-GAPDH-Santa-Cruz-sc-32233; dilute 1:1000, incubate for 2 h at room temperature) and (vi) incubation of secondary antibody (mouse IgG-CST-#7076; rabbit IgG-CST-#7074; dilute 1:10000, incubate for 2h at room temperature) were followed.
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7

Egg Yolk Protein Characterization

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The egg sample was bought from local supermarkets. Pv standard from egg yolk was obtained from Sigma Chemical Company (St. Louis, MO, USA). Sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) gel preparation kit (Solarbio, Beijing, China) was used for characterization of the protein. All other chemicals obtained from Aladdin (Shanghai, China) were of analytical grade. All the solutions were prepared using ultrapure water obtained from Northeast Agricultural University.
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8

Juglone's Impact on P. aeruginosa Proteins

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First, 10 mL of P. aeruginosa (approximately 107 CFU/mL) cells treated with juglone (at a final concentration of 0 (control), 1/2MIC, MIC, and MBC) for 12 h were collected and resuspended in 1 mL of PBS, before treating with ultrasound for 5–10 min in an ice bath. The cleaned sediment was treated with a bacterial protein extraction kit (Solarbio, Beijing, China) to obtain bacterial intracellular proteins. The extracted protein was mixed with the protein dye in equal amounts, and then the mixture was boiled for 5 min, before being centrifuged at 10,000 rpm for 5 min. According to the protocol of the SDS-PAGE gel preparation kit (SolarBio, Beijing, China), 5% stacking and 12% separation gels were used for electrophoresis, before dyeing with Coomassie Bright Blue for 2 h. Finally, the gel was rinsed with eluent for another 10 h.
At 0, 2, 4, 6, 8, 10, and 12 h, 1 mL of bacterial suspension was centrifuged to obtain supernatant. The protein content in the supernatant was determined using the protein detection kit (Beyotime Biotechnology, Shanghai, China) to determine the damage to the P. aeruginosa membrane.
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9

Protein Characterization by SDS-PAGE

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The protein was characterized by a sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel preparation kit (Solarbio, Beijing, China). A PHS-3C pH meter (Shanghai Instrument Electric Scientific Instrument Co., Ltd., Shanghai, China) was used to measure the pH of the solution. Centrifugation was performed on a CT14D desktop high speed centrifuge (Shanghai Techcomp Scientific Instrument Co., Ltd., Shanghai, China) and a SC-3610 low speed centrifuge (Hefei Zhongke Zhongjia Scientific Instrument Co., Ltd., Hefei, China). An AL-04 electronic analytical balance (Mettler Toledo Instruments Co., Ltd., Shanghai, China) was used to weigh the sample. The sample was dialyzed with an 8000 Da MWCO filter (Spectrum Labs, Los Angeles, CA, USA). The lyophilizer (LyoQuest-85 Plus, Telstar, Terrassa, Spain) was used to lyophilize the sample.
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10

SDS-PAGE Analysis of Cellular Proteins

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Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) was performed to analyze the cellular proteins according to a previously described method [33 (link)]. The collected samples were consistent with those described in Section 3.4.4. The samples were mixed with 5X protein loading buffer, whereafter the mixtures were boiled for 5 min, then cooled and centrifuged. The supernatants of the S. aureus cells were collected for SDS-PAGE analysis. An SDS-PAGE gel preparation kit (Solarbio, Beijing, China) was used to prepare the gel (5% stacking gel and 12% separating gel). After electrophoresis, the gel was stained with Coomassie brilliant blue R-250 and decolorized for analysis.
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