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The Merlin is a versatile lab equipment designed for performing a range of scientific experiments. It is a compact and user-friendly device that offers precise control and monitoring of various parameters. The core function of the Merlin is to provide a reliable and consistent platform for researchers to conduct their studies.

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5 protocols using merlin

1

Analyzing GLI1 and GLI2 Expression in NF2-Depleted Cells

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Cell lysates were collected in NP-40 buffer. Cytosolic and nuclear fractions were collected with an NE-PER kit (Pierce, Rockford, IL). Antibodies used include GLI1 (#2643; Cell Signaling, Danvers, MA), Merlin (#sc-55574; Santa Cruz Biotechnology, Santa Cruz, CA), GLI2 (#PA1941; Boster Bio Pleasanton, CA), GAPDH (#2118; Cell Signaling). Blots were developed with SuperSignal substrate (Pierce). The cytosolic and nuclear fractions were confirmed with anti-β-tubulin (#2146; Cell Signaling) or anti- HDAC1 (#2062; Cell Signaling) respectively. To assess the expression and localization of GLI1 and GLI2 in the MCF10AT KD cells (knockdown for NF2) in comparison to the MCF10AT NT (transfected with non-targeting vector), 100 μg of cytosolic and nuclear lysates were immunoprecipitated with either GLI1 or GLI2 antibodies and immunoblotted with the corresponding antibodies.
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2

Immunofluorescence Analysis of GBM Markers

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Human GBM and normal brain tissues were obtained from the Cooperative Human Tissue Network (CHTN). Anti-FRMD6 (Sigma), -Lats1/2 (Bethyl Lab), -MST1/2, -YAP, -c-Met, -PDGFRA, -PDGFRB, and -merlin (Santa Cruz), -actin (Sigma), -v5 epitope (Invitrogen), -phospho-Lats1, -phospho-YAP (Cell signaling), -phospho-c-Met (Invitrogen and Santa Cruz), and -phospho-PDGFRA/B (Santa Cruz and R & D Systems) antibodies were used in the experiments. Anti-Ki67 was from the Fisher Scientific. Secondary anti-rabbit Alexa Fluor® 594 and anti-mouse Alexa Fluor® 488 were from Invitrogen.
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3

Western Blotting of Protein Extracts

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Western blots of protein extracts prepared from VS or GAN tissue or culture lysates were performed as described previously (Brown and Hansen 2008 (link); Hansen et al. 2006 (link); Yue et al. 2011 (link)). The primary antibodies used were anti-p75NTR (kindly provided by Dr. Moses Chao), phosphorylated JNK (pJNK, Cell Signaling), JNK (Cell Signaling), phosphorylated JUN (pJUN, Cell Signaling), merlin (Santa Cruz), cleaved caspase-3 (Cell Signaling), RIP2 (Enzo Lifesciences, Farmingdale, NY), sortilin (Abcam), β-actin (Sigma), and Rho-GDI (Cell Signaling). Secondary antibodies (dilution,1:5000-50,000; Santa Cruz) were conjugated with horseradish peroxidase. Blots were developed using Super Signal West Femto kit (Thermo Fisher Scientific, Rockford, IL) and exposed to film (Amersham Hyperfilm TM ECL; GE Healthcare). As needed, membranes were stripped and re-probed with other antibody combinations. Densitometry to quantify protein levels was performed as previously described and statistical significance was determined with a student's non paired, two-tailed t- test.
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4

Immunoblotting of Sciatic Nerve Proteins

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Immunoblotting was performed as described in [32 (link)]. Separate pooled protein lysates were prepared from both intact and crushed sciatic nerves. The following primary antibodies were used: phospho-c-Jun (Ser73, 1:1000, Cell Signaling, USA, 8752), Neuregulin 1 (1:250, Santa Cruz, USA, clone C-20), Erk (1:500, Cell Signaling, USA), phospho-Erk (T202/Y204, 1:500, Cell Signaling, USA), ErbB2 (1:500, Cell Signaling, USA), GAPDH (1:1000, Santa Cruz, USA, 6C5) and merlin (1:500, Santa Cruz, USA A19). Results were quantified using gel analysis software by ImageJ. Density values were normalized to GAPDH and appropriate controls of transfection or wild-type tissue, respectively. In the case of phospho-specific detection of proteins, their acquired densities were referred to signals derived from related pan-antibodies that served as loading control (e.g., phospho-Erk to Erk signals).
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5

Immunoblotting and Immunoprecipitation Analysis

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Immunoblotting analysis was performed as described previously25 (link) using antibodies specific for β-catenin [Cell Signaling Technology (CST); 8480], CBP (CST; 7389), Merlin (Santa Cruz; sc-331), FOXM1 (Santa Cruz; sc-376471), p21 (CST; 2947), survivin (CST; 2808), and β-actin (CST; 4970). For immunoprecipitations, cell lysates and indicated antibodies (1 µg) were subjected to overnight rotation at 4°C. Protein A-Sepharose beads (40 µL, GE Healthcare) were added for 3 hours, followed by centrifugation, washed four times, and boiled with loading buffer for immunoblotting analysis.
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