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8 protocols using anti pdgf bb

1

Comprehensive Protein Expression Analysis

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The primary antibodies used were anti-collagen I, anti-VEGF and anti-PDGFBB (Abcam, Cambridge, UK); anti-TSG101, anti-CD9, anti-CD63, and anti-CD81 (System Biosciences, Mountain View, CA, USA). The primary antibodies anti-CD41, anti-TGF-β, anti-bFGF, anti-cleaved-caspase-3, anti-Runx2, anti-β-catenin, anti-β-tubulin, anti-calnexin, anti-Bcl-2, anti-CHOP, anti-Bad and phosphorylated Bad (p-Bad), anti-Erk1/2 and phosphorylated Erk1/2 (p-Erk1/2), anti-Akt and phosphorylated Akt (p-Akt) antibody were all obtained from Cell Signaling Technology (Danvers, MA, USA). The anti-PERK and phosphorylated PERK (p-PERK) antibodies were obtained from Santa Cruz Biotechnology.
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2

Immunohistochemical Analysis of Inflammatory Markers

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Sections had paraffin removed and were rehydrated, followed by a disruption of endogenous catalase activity with a 3% H2O2 solution. Slides were then heated for 15 minutes to 95°C in a citrate-based buffer. Blocking was performed at 37°C using goat serum, followed by primary antibody incubation at 37°C in a humid chamber for 2 hours. Primary antibodies were: anti-IL-12p40 (1:200, Abcam, Cambridge, UK), anti-MIP-1β (1:200, Abcam), anti-PDGF-BB (1:200, Abcam), and anti-IL-1Ra (1:200, Abcam). Secondary antibody conjugated to horseradish peroxidase was then used (ZSGB-BIO, Beijing, China), and after a phosphate buffer saline was 3, 30-diaminobenzidine and then hematoxylin were used to stain the slides. Antibody binding was colored brown under the light microscope, with images captured using a digital camera. The positive condition was measured by estimating the color: brown staining indicated protein expression area, while shade represented the level of protein expression.
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3

Protein Extraction and Western Blot Analysis

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Samples of 50 mg were weighed, and the Cell lysis kit (Bio-Rad, Hercules, CA) was then employed as a means of extracting protein on ice with fresh protease and phosphatase inhibitors, as well as freshly added Phenylmethylsulfonyl fluoride. Following lysis and centrifugation, equivalent quantities of protein were run on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels and transferred onto nitrocellulose membranes. Blocking buffer (Li-cor, Lincoln, NE) was used to block these membranes that were then stained using primary anti-IL-12p40 (1:500, Abcam), anti-MIP-1β (1:500, Abcam), anti-PDGF-BB (1:500, Abcam), anti-IL-1Ra (1:500, Abcam,), or anti-b-actin (1:2000, Santa Cruz Biotechnology, Dallas, TX) antibody for 12 hours at 4°C. A secondary antibody (Li-cor) diluted 1:10,000 was then used, followed by color detection via infrared laser imaging system (Odyssey, Li-cor).
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4

Quantifying Ulcer Tissue Protein Levels

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Protein contents of VEGF-A, PDGF-BB, IL-1β, and TNF-α in ulcer tissue homogenates were evaluated by western blot. In brief, the protein concentrations of homogenates were determined using a BCA protein assay (Pierce Biotechnology, Rockford, IL, USA). Equivalent amount of protein samples (30 μg) was separated on an SDS polyacrylamide gel and transferred onto a polyvinylidene difluoride membrane (Millipore). After blocking in TBS containing 5% nonfat milk for 2 h at room temperature, the membranes were incubated overnight with 1 : 1,000 diluted anti-VEGF-A (Abcam), 1 : 2000 diluted anti-PDGF-BB (Abcam), 1 : 200 diluted anti-IL-1β (Santa Cruz Biotechnology), 1 : 500 diluted anti-TNF-α (Abcam), and 1 : 8000 diluted anti-β-actin (Tianjin Sungene Biotech Co., Ltd.), respectively. Binding of the primary antibody was detected using a HRP-conjugated secondary antibody (Tianjin Sungene Biotech Co., Ltd.). Positive bands were visualized using an ECL kit (Bio-Rad) and then captured on X-ray film. Housekeeping protein β-actin was used as a loading control. The density of each band was quantified using Quantity One software (Bio-Rad Laboratory) and normalized to their respective control.
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5

Extracellular Vesicle Protein Analysis

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The primary antibodies used were anti-VEGF and anti-PDGFBB (Abcam, Cambridge, UK); anti-CD9, anti-CD63, anti-CD81 (System Biosciences); anti-CD41, anti-TGF-β, anti-bFGF, anti-YAP and phosphorylated YAP (p-YAP), anti-Erk1/2 and phosphorylated Erk1/2 (p- Erk1/2), anti-Akt and phosphorylated Akt (p-Akt) (Cell Signaling Technology).
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6

Quantifying PDGF-BB and BMP7 Expression in hPDL Cells

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4 × 105 hPDL cells were seeded using the same method as above. Each pair of scaffolds was placed in a separate well of a 12-well plate and incubated for 48 h in growth media. Scaffolds were then fixed in cold methanol at −20 °C for 6 min. After washing 3× with PBS, samples were preincubated for 1 h in 3% bovine serum albumin (BSA). The pair of scaffolds was incubated at 4 °C overnight with rabbit polyclonal anti-PDGF-BB (2 μg mL−1, Abcam, USA) and mouse monoclonal anti-BMP7 (1 μg mL−1, Abcam, USA), followed by 3 × 5 min PBS rinses. Samples were incubated with anti-mouse TRITC-labeled (1:100) and anti-rabbit fluorescein isothiocyanate (FITC)-labeled (1:100) secondary antibodies for 1 h. Fluorescence images were taken under 1× and 100× magnification (Nikon SMZ18) and double-staining images were merged using ImageJ software.
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7

Immunohistochemical Staining of Fibrotic Markers

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The primary antibodies used were mouse monoclonal anti-α-SMA (clone IA4, diluted 1:5000; Sigma Immunochemicals, St. Louis, MO, USA), rabbit polyclonal anti-PDGF-BB (diluted 1:500; Abcam, Cambridge, MA, USA), and rabbit polyclonal anti-CTGF (diluted 1:2000; Abcam).
All specimens were immunohistochemically stained using the DAKO EnVision System (Dako Ltd., High Wycombe, Bucks, UK) according to the manufacturer's instructions. Specimens were incubated with the peroxidase-labeled polymer conjugated to goat anti-mouse or anti-rabbit immunoglobulins for 40 minutes, and visualized using diaminobenzidine solution. The tissue sections were then counterstained with Mayers Hematoxylin (Muto, Tokyo, Japan) before mounting onto a cover slip.
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8

Ginsenoside Rb1 Bioactivity Assessment

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Ginsenoside Rb1 (purity > 99.5%) was purchased from the National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China). SSD cream (1%) was used as a positive control.Anti-FGF-2, anti-PDGFR-β, anti-PDGF-BB and anti-β-actin antibodies were purchased from Abcam (Shanghai, China). A BCA protein quantification kit was purchased from BiyunTian (Shanghai, China). Electrochemiluminescence (ECL) reagent was purchased from Millipore (Billerica, MA, USA). A total RNA extraction kit was purchased from Tiangen (Beijing, China). A RevertAid First Strand cDNA Synthesis Kit was purchased from Thermo Fisher Scientific (Waltham, MA, USA). RT-PCR Master Mix was purchased from Vazyme (Nanjing, China).The various other chemicals used were of analytical grade and commercial origin.
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