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5 protocols using anti gs

1

Liver Pathology Analysis via Immunohistochemistry

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Mice were sacrificed by carbon dioxide asphyxiation. Livers were fixed in 4% formalin overnight, embedded in paraffin, sectioned at 4 μm and stained with hematoxylin and eosin (H&E) for pathology. Liver sections were de-waxed, rehydrated and stained using standard immunohistochemistry protocols32 (link). The following antibodies were used: anti-Pten (Cell Signaling, 9559, 1:100), anti-pAkt S473 (Cell Signaling, 4060, 1:50), β-Catenin (BD,610154, 1:100), anti-p53 (CM5, 1:300), anti-GS (BD 610517, 1:200) and anti-Ck19 (Abcam, ab133496, 1:100). The number of hepatocytes was quantified from >3 low-magnification fields per mouse with 5 mice per group. Immunofluorescence was performed as previously described32 (link). β-Catenin (BD,610154) and phospho-β-Catenin (Abcam, ab53050) antibodies were used. Slides were counterstained with 4, 6-diamidino-2-phenylindole (DAPI). Images were obtained with a Nikon A1R laser scanning confocal microscope using a 40× APO Fluor objective (NA 0.65).
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2

Immunohistochemistry of Liver Proteins

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Immunohistochemistry was performed in FFPE liver tissues with the following antibodies: anti-CRP (monoclonal rabbit, 1/400 dilution; Abcam), anti-LFABP (polyclonal rabbit, 1/100 dilution; Abcam), anti-β-catenin (monoclonal mouse, 1/200 dilution; BD Biosciences); anti-GS (monoclonal mouse, 1/400 dilution; BD Biosciences), and anti-SAA (monoclonal mouse, 1/100 dilution; Dako).
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3

Immunohistochemistry of Retinal Markers

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Primary antibodies: anti-Ceh-10 homeodomain-containing homolog (Chx10, also known as VSX2) (Exalpha, X1179p), anti-CS56 (Abcam, ab11570), anti-GFP (Life, G10362 (rabbit); Aves labs, GFP-1020 (chick)), anti-GS (BD, 610517), anti-Iba I (Wako, 019-19741), anti-Pax6 (Abcam, ab5790), anti- phosphosynaptic density protein 95 (PSD-95) (CST, #3409), anti-rhodopsin (Phosphosolutions, 1840-RHO), and anti-Sox9 (Millipore, ab5535). Secondary antibodies: Alexa488 conjugated donkey anti-rabbit (Jackson Immuno Res., 711-545-152) and Alexa488 conjugated goat anti-mouse (Life, A-11029), Alexa488 conjugated goat anti-chick (Invitrogen, A11039), Cy3 goat anti-rabbit (Jackson Immuno Res., 111-165-047 or 111-165-144), Alexa647 conjugated goat anti-mouse (Life, A21236) and Alexa647 conjugated donkey anti-rabbit (Life, A31573) antibodies.
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4

Protein Extraction and Western Blot Analysis

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After the treatments indicated, the cells were harvested and the proteins extracted with lysis buffer (1.5 mmol/L EDTA, 50 mmol/L Hepes pH 7.4, 150 mmol/L NaCl, 10% (v/v) glycerol, and 1% (v/v) NP40) containing proteases and phosphatase inhibitors (Thermofisher scientific). The lysates were centrifuged at 12, 000 g for 20 minutes at 4°C and the supernatants were collected. Equal amounts of proteins (40 µg) were separated onto a 4% to 20% SDS-PAGE gel (Bio-Rad), transferred onto a nitrocellulose membrane (Protran, Whatman) at 70 V, 35 minutes at 4°C and blocked with 5% w/v skimmed milk or BSA for 1 hour. The antibodies used in immunoblotting were as follows: homemade anti-UCP2 (UCP2–605) (29 (link)), anti-Notch1ICD valine1744 (Cell signaling, 4147); anti-cMyc (Cell Signaling, 5605); anti-HK2 (Cell signaling, 2867); anti-PDH (Cell signaling, 2784); anti-GLS (Abcam, ab93434); anti-GS (BD, 610517); anti-CS (Abcam, ab85669); anti-GADPH (Cell Signaling, 2118); anti-ASNS (proteintech, 14681-1-AP) and anti-ß-Actin (Sigma-Aldrich, A5441), anti-α-Tubulin (Sigma-Aldrich, T5168). A direct recording of the chemiluminescence and a quantification (Fusion® software) were carried out. Western blot analyzes were performed using independent samples.
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5

Immunohistochemical Analysis of Zebrafish Retina

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The procedures were performed according to the previous report (Cao et al., 2018a (link)). Briefly, zebrafish embryos were fixed in 4% PFA at 4°C overnight. They were then dehydrated in 30% sucrose until they sank, embedded in OCT tissue freezing medium, and cryosectioned at 10-μm thickness using a Leica Cryostat Microtome. Slides were subjected to antigen retrieval for 30 min at 98°C, except for those analyzed with anti-Zn5 antibodies. They were then incubated with primary antibodies overnight at 4°C, including anti-Zn5 (1:500, Zebrafish International Resource Center), anti-Pax6 (1:500, Covance, PRB-278P-100), anti-αPKC (1:500, Santa Cruz Biotechnology, sc-208), anti- GS (1:500, BD Biosciences, 610518), anti-GFAP (1:500, ThermoFisher Scientific, PA5-16291), anti-Recoverin (1:500, Millipore, AB5585), and anti-Rho 1D4 (1:500, Abcam, ab5417). Then, the slides were washed with PBST three times and incubated with Alexa Fluor 488-conjugated donkey anti-rabbit antibody (1:500, Invitrogen, A-10042) and Alexa Fluor 568-conjugated donkey anti-mouse antibody (1:500, Invitrogen, A-21202) at room temperature for 2 h. Images were obtained using a confocal microscope (Ism 710; Zeiss).
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