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17 protocols using tnf α

1

Western Blot Analysis of Protein Expression

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Protein samples were separated by 8%, 10%, or 12% sodium dodecyl sulfate-polyacrylamide gels (SDS-PAGE) and then transferred onto PVDF membranes (EMD Millipore, Burlington, MA, USA). After being blocked with 5% non-fat milk, the membranes were incubated with the following primary antibodies at 4°C overnight: α-tubulin (GeneTex, Irvine, CA, USA), collagen I (GeneTex), α-SMA (Proteintech, Chicago, IL, USA), TGF-β (Cell signaling technology, Danvers, MA, USA), TNF-α (GeneTex), NLRP3 (Proteintech), caspase-1 (Proteintech), IL-18 (Proteintech), IL-1β (Proteintech), caspase-3 (GeneTex), caspase-8 (GeneTex), caspase-9 (GeneTex), and BCL-2 (GeneTex). Membranes were then incubated with HRP-conjugated mouse anti-IgG (EMD Millipore) or HRP-conjugated rabbit anti-IgG (EMD Millipore) secondary antibodies for 1 h. Membranes were developed using ECL detection reagent (EMD Millipore). Relative protein levels were quantified using Image J (Version 1.46, National Institute of Health, Bethesda, MD, USA), and protein densitometry were expressed relative to that of α-tubulin.
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2

Cytokine Immunomodulation Protocols

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Antibodies for IL-1β, IL-6 and TNF-α were obtained from GeneTex International Corporation. Lipofectamine® 2000 and Trizol® were acquired from Life Technologies. The miRNA mimic, inhibitor and negative control and Dharmafect1 were purchased from Dharmacon. β-Actin antibody and all other chemicals not already mentioned were acquired from Sigma-Aldrich.
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3

Hippocampal Protein Expression Analysis

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Use lysis solution to process hippocampal tissue and extract protein components in the tissue. Electrophoresis was used to separate the proteins, which were then moved to cellulose membranes. After 5% skim milk was used to block the membrane, SIRT3 (1:1000), TNF-α, IL-1β, and IL-6 primary antibody solutions (1:3000, GeneTex, Irvine, CA, USA) were added and left overnight to incubate. As an internal control, GAPDH (1:5000, Abcam, Cambridge, MA, USA) primary antibody solution was utilized. After applying HRP-conjugated secondary antibody (1:5000; Cell Signaling Technology, Danvers, MA, USA) solution to the membrane, an enhanced chemiluminescence detection kit (Thermo Fisher, Waltham, MA, USA) was used to identify the membrane. The inside of the membrane was measured using Image J software.
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4

Cellular Responses to Iron Compounds

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Ferric sulfate and ferrous sulfate heptahydrate were purchased from Energy Chemical Technology Co., Ltd. (Shanghai, China). Ferric citrate was purchased from Sigma‐Aldrich (St. Louis, MO). Fetal bovine serum (FBS) was purchased from Invitrogen (Carlsbad, CA). Dulbecco's Modified Eagle's Medium (DMEM) was obtained from Sigma (Yuzhong District, Chongqing, China). Antibodies against p21 and C646, a p300/CREB‐binding protein (CBP) inhibitor, were purchased from Abcam Trading Co. Ltd. (Shanghai, China). N‐acetyl‐l‐cysteine (NAC), dihydroethidium (DHE), and a ROS Detection Kit were purchased from Beyotime Company (Jiangsu, China). Prussian Blue staining solution was acquired from Leagene Biological Technology Co. Ltd. (Beijing, China). Antibodies against p53, acetylated p53, CD86, and CD206 were from Cell Signaling Technology (Danvers, MA), and IL‐1, IL‐10, TGF‐β, and TNF‐α were purchased from GeneTex (San Antonio, TX). p21, p300, CBP, p65, phosphorylated p65, and glyceraldehyde 3‐phosphate dehydrogenase (GAPDH) were purchased from Abcam (Cambridge, MA). FITC‐CD86 and APC‐CD206 were purchased from Thermo Fisher Scientific (Waltham, MA).
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5

Western Blot Analysis of Bladder Proteins

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For western blotting, total protein was extracted from mouse bladders and clinical specimens using RIPA lysis buffer (Beyotime, Shanghai, China), and protein concentrations were measured using a Bio-Rad DC Protein Assay Kit (Bio-Rad, Hercules, CA, USA). Fifty micrograms of protein was then loaded onto SDS-PAGE gels and separated before being transferred to PVDF membranes (Merck Millipore, Darmstadt, Germany). After being blocked with 5% bovine serum albumin dissolved in Tris-buffered saline for 2 h, the membranes were incubated with primary antibodies to the following proteins overnight at 4 °C: IL-6 (GeneTex, San Antonio, TX, USA,GTX110527, 1:1000), TNF-α (GeneTex, GTX110520, 1:1000), HCN1 (Abcam, Cambridge, UK, ab84816, 1:1000), HCN2 (Abcam, ab65704, 1:1000), HCN3 (Abcam, ab84818, 1:1000), HCN4 (Abcam, ab69054, 1:1000), Filamin A (Cell Signaling Technology, Beverly, MA, USA, 4762, 1:1000), NEDD4L (Cell Signaling Technology, 4013, 1:1000), α-tubulin (Beyotime, AT819, 1:1000) and GAPDH (Beyotime, AG019, 1:1000). Horseradish peroxidase-conjugated species-specific secondary antibodies (Zhongshan Co., Beijing, China, ZB-2301, ZB-2305, 1:5000) were used to detect the above primary antibodies. The proteins were visualized using ECL Substrate (Millipore, Billerica, MA, USA) and detected using an Image Quant LAS-4000 BioImaging System (GE Healthcare, Stockholm, Sweden).
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6

Orbital Tissue Protein Analysis

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Protein lysates were prepared from animal orbital tissues and human OFs; orbital tissues from each group were homogenized with PRO-PREP solution (Intron, Gyeonggido, Korea). A total of 20 ug proteins were separated by sodium dodecylsulfate (SDS)-polyacrylamide gel electrophoresis and transferred to the membrane. Membranes transferred from gels were incubated with primary antibodies such as anti-PPARγ (GeneTex, Irvine, CA, USA), C/EBPα (GeneTex), IGF-1R (GeneTex), p-SMAD3 (GeneTex), p-SMAD2 (GeneTex), IL-6 (GeneTex), TNFα (GeneTex), ICAM-1 (Thermo Fisher Scientific), TGFβ1 (GeneTex), and β-actin (Santa Cruz Biotechnology, Inc., Dallas, TX, USA). After washing, second antibodies (GeneTex), horseradish peroxidase-conjugated anti-rabbit or mouse IgG were diluted 1:5000 and were incubated with membranes at room temperature for 2 h. The target protein bands were detected with enhanced chemiluminescence (ECL) solution (Bio-Rad Laboratories, Hercules, CA, USA) using an ImageQuant LAS 4000 (GE Healthcare Life Sciences, Little Chalfont, UK).
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7

IL-8 Secretion Evaluation in Tissue Samples

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IL-8 secretion evaluation was performed by ELISA (BD OptEIA™, BD Bioscience, Franklin Lakes, New Jersey, United States) in untreated (n=3), EDS-treated (n=3), SNH-treated (n=3) and Cytomix-treated (positive control, n=3) tissues. Cytomix was composed of 1% FCS (Amimed, Cat 2–01F36-I, BioConcept Ltd, Allschwil, Switzerland), 0.2mg/mL LPS (Sigma) and 500ng/mL TNF-α (GeneTex, Irvine, California, United States).
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8

Western Blot Analysis of Neuroinflammatory Markers

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Western blot analysis was performed as previously described (22 (link)). Total protein from five mice was extracted from the ipsilateral cortices using ice-cold RIPA buffer. Protein concentrations were detected using BCA Protein Assay Kits (Thermo Fisher). Protein samples were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to polyvinylidene difluoride membranes. The relevant proteins were detected by incubating the membranes with primary antibodies overnight (i.e., β-actin, 1:1,000, CST, Cat #: 4970S; TNF-α, 1:10,000, GeneTex, Cat #: GTX110520; IL-1β, 1:1,000, CST, Cat #: 12242S; TLR4, 1:1,000, Abcam, Cat #: ab13556; NF-κB, 1:1,000, CST, Cat #: 8482S; TGF-β, 1:2,000, Torrey Pines Biolabs; ZO-1, 1:1,000, Invitrogen, Cat #: 40-2200; and occludin, 1:1,000, Invitrogen, Cat #: 33-1500) and then with secondary antibodies (i.e., horseradish-peroxidase conjugated goat anti-rabbit or anti-mouse IgG, 1:3,000, Cell Signaling Technology). Immunoblots were visualized using a Millipore ECL Western Blotting Detection System (Millipore, Billerica, MA, USA).
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9

Streptozotocin-Induced Diabetes Model in MC3T3-E1 Osteoblasts

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Streptozotocin (STZ) and EDTA were the products of Sigma. The total cholesterol detection kit and TG detection kit were the products of British Smith & Nephew Co. Ltd. The insulin radioimmunity kit was the product of Furui Biology Co. (Beijing, China). The mouse anti-proliferating cell nuclear antigen antibody was the product of Bio-genex Company of the United States. The monoclonal anti FGF-2 (Cat# GTX84502) and TNF-α (Cat# GTX52438) antibodies were provided by GeneTex (Beijing, China). HRP goat anti-mouse IgG was provided by Kangwei Century Co. (Beijing, China). Trizol, DMEM medium (low sugar), trypsin, and antibiotics were the products of Invitrogen. Fetal bovine serum was provided by Hangzhou Sijiqing Company. Superscript reverse transcription kit was from Thermo. SYBR ®Green Realtime PCR Master Mix was the product of Bio-TEK. Mouse osteoblast cell lineMC3T3-E1 was provided by Changsha Yingrun Biotechnology Co., Ltd.
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10

Western Blot Analysis of Inflammatory Markers

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Briefly, the brain tissues from the left hemisphere were washed twice with PBS and disrupted with RIPA lysis buffer. Then, the tissue suspension was centrifuged at 12,000 rpm for 15 min at 4°C, and the supernatant was used to determine the concentration of the sample with a BCA protein assay kit (Beyotime, China). Equal amounts of samples were separated by SDS-PAGE and electrotransfered to polyvinylidene difluoride membranes. Subsequently, the membranes were blocked with 5% skim milk for 1 h at room temperature and incubated overnight at 4°C with the indicated primary antibodies against NLRP3 (1 : 500, Bios), caspase 1 (1 : 1000, Abcam), IL-1β (1 : 500, Abcam), IL-6 (1 : 1000, Abcam), TNF-α (1 : 500, Gene Tex), MMP-9 (1 : 500, Bios), vascular endothelial growth factor (VEGF) (1 : 500, Bios), vascular endothelial growth factor receptor 2 (VEGFR2) (1 : 1000, CST), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1 : 2500, Abcam). After rinsing with TBST three times, the membranes were incubated with the appropriate horseradish peroxidase-conjugated secondary antibodies (1 : 1000, Abcam) for 1 h at 37°C. Chemiluminescence (ECL) kits were used to visualize the membranes, and a Syngene Tanon 5200 imaging system (Tanon, China) was used for imaging. The optical density of the bands was quantified using ImageJ software and corrected according to the corresponding GAPDH level.
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