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18 protocols using pthr308 akt

1

Gendicine-Mediated Signaling Pathways in Cancer

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Gendicine was purchased from Shenzhen SiBiono (Shenzhen, China). Primary antibodies against DIRAS3, p53, Bax, signal transducer and activation of transcription 3 (STAT3), c-Myc, cyclin D1, vascular endothelial growth factor (VEGF), fibroblast growth factor (FGF), epidermal growth factor receptor (EGFR), Bcl-2, and GAPDH were purchased from Abcam (Cambridge, MA, USA). Primary antibodies against p21WAF1/CIP1, Akt, p-Ser473-Akt, p-Thr308-Akt, 4E-BP1, p-Thr37/46-4E-BP1, p-Ser65-4E-BP1, p-Thr70-4E-BP1, and LC3 were obtained from Cell Signaling Technology (Beverly, MA, USA). All secondary antibodies were purchased from Zhongshan Jinqiao Biotech (Beijing, China). Baf A1 was obtained from Sigma-Aldrich (St. Louis, MO, USA).
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2

Immunoblotting of Signaling Pathways in Cell Lysates

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The cell lysates were prepared using immunoprecipitation assay lysis buffer (Millipore, Burlington, MA, USA) supplemented with protease and phosphatase inhibitors (Roche, Basel, Switzerland). Protein concentration was measured by the DC protein assay (Bio-Rad, Hercules, CA, USA), and approximately 30–40 μg of proteins in Laemmli buffer were used. Western blotting was performed as described previously [29 (link)]. Densitometry was performed using NIH ImageJ software. Antibodies used include pSer473-Akt (Cat No. 9271), pThr308-Akt (Cat No. 9275), Pan Akt (Cat No. 4685), pP38 MAP Kinase (Cat No. 9215), total P38 MAP Kinase (Cat No. 9212), VE-cadherin (Cat No. 2500), and GAPDH (Cat No. 5174), were purchased from Cell Signaling, Danvers, MA, USA. Anti-Claudin-5 (CLDN5) (Cat No. 352500) antibody was purchased from Thermo Scientific, Waltham, MA, USA. Anti-mouse (Cat No. 170-6516) and anti-rabbit (Cat No. 170-6515) HRP-conjugated secondary antibodies were obtained from Bio-Rad (Hercules, CA, USA). Alexa 485-conjugated secondary antibodies were purchased from Thermo Scientific (Frederick, MD, USA). Antibody dilutions are provided in Appendix A.
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3

Antibody Panel for Adipose Protein Analysis

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The protease inhibitor cocktail (cOmplete Mini) and a phosphatase inhibitor cocktail (PhosSTOP) were obtained from Roche Diagnostics. The following antibodies were obtained from Cell Signaling Technology: Cox4 (4844), PPARγ (2435), C/EBPα (8178), p-Ser239 VASP (3114), total VASP (3112), p-Ser473 AKT (4060), p-Thr308 AKT (9275), total AKT (9272), p-Ser563 HSL (4139), total HSL (4107), ATGL (2439), ADIPOQ (2789), GLUT4 (2213), ACC (3676), FASN (3180), and β-actin (4967). Other antibodies used include NPRC (NBP1–31365, Novus Biologicals), NPRA (NBP1–31333, Novus Biologicals), NDUFS4 (PA5–21677, Pierce Biotechnology), UCP1 (ab23841, Abcam), and GAPDH (sc25788, Santa Cruz Biotechnology) and CYTOC (sc13156, Santa Cruz Biotechnology). Secondary antibodies against rabbit immunoglobulin G (IgG) (A3687) and mouse IgG (A3562), both conjugated with alkaline phosphatase, were from Sigma-Aldrich.
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4

Antibody Characterization for AKT Signaling

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We obtained antibodies to AKT (Cell Signaling Technology, 9272), p-Thr308 AKT (Cell Signaling Technology, 5106), p-Ser473 AKT (Cell Signaling Technology, 9271), GAPDH (Santa Cruz Biotechnology, sc-25,778), LC3B (Cell Signaling Technology, 2775), MAPK8/9 (R&D Systems, AF1387), p-Thr183/Tyr185 MAPK8/9 (Cell Signaling Technology, 9255 [Figure 3] and Cell Signaling Technology, 4668 [Figs. S8 and S9]), RPS6KB1 (Cell Signaling Technology, 9202), p-Thr389 RPS6KB1 (Cell Signaling Technology, 9206), SQSTM1 (Progen, GP62-C), and TUBA (Millipore Sigma, T5168), from the indicated suppliers.
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5

Antibody Validation for EGFR Signaling

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The primary antibodies MAPK (Erk) (#9102, 1:1000), Akt (1:1000, #9272), Phospho-EGF Receptor (Tyr1068) (1:1000, #2234), p(Thr308)-Akt (1:1000, #9275), Phospho-Akt (Ser473) (1:1000, #9271), Phospho-MAPK (pERK) (1:1000, #9101), β-Actin (1:10000, #4967) were purchased from Cell Signaling (Leiden, The Netherlands) and anti-EGFR (1:1000, sc-03-G) was purchased from Santa Cruz Biotechnology(Texas, USA). Cetuximab (ERBITUX) was ordered from Merck (Dietikon, Switzerland). Gefitinib (Iressa) was bought from Sigma (Zwijndrecht, The Netherlands); sunitinib was purchased from LC Laboratories (Woburn, USA). Entinostat and SAHA were purchased from Selleckchem (Munich, Germany). Staurosporine and cisplatin were purchased from Sigma-Aldrich (Zwijndrecht, Nederland). Doxorubicin was purchased from Teva Pharmaceuticals. All drugs were aliquoted in DMSO and stored at -20°C. The human epidermal growth factor (hEGF) and platelet-derived growth factor (PDGF) were purchased from Sigma-Aldrich (Zwijndrecht, Nederland).
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Signaling Pathway Antibody Panel for JAK-STAT Analysis

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Antibodies against p-Tyr1022/1023-JAK1 (#3331), p-Tyr1007/1008-JAK2 (#3776), p-Tyr980/981-JAK3 (#5031), p-Tyr1054/1055-TYK2 (#9321), p-Tyr701-STAT1 (#9167), p-Tyr705-STAT3 (#9145), p-Tyr694-STAT5 (#9359), JAK1 (#3332S), JAK2 (#3230), JAK3 (#8863), TYK2 (#9312), STAT1 (#14994), STAT3 (#12640), STAT5 (#25656), c-Myc (#13987), cyclin D1 (#AF0931), Bcl-xL (#2764), p-Ser536-NF-κB (#3033), p-Thr308-AKT (#9275), p-Ser9-GSK-3β (#5558), p-Thr183/Tyr185-SAPK/JNK (#4668), NF-κB (#8242), AKT (#4691), GSK-3β (#9832), and SAPK/JNK (#9252) were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against α-tubulin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Protease inhibitor (B14001) and phosphatase inhibitor (B15001) were purchased from Bimake (Houston, TX, USA). Recombinant human STAT3 protein (ab268982) was obtained from Abcam (Cambridge, Britain). Recombinant human interleukin-6 (IL-6) protein (200-06) was purchased from PeproTech (Rocky Hill, CT, USA). Nitrocellulose membranes and chemiluminescent horseradish peroxidase (HRP) substrate were obtained from Millipore (Billerica, MA, USA). Gefitinib was purchased from Selleckchem (Houston, TX, USA). DAB color solution, hematoxylin solution, and eosin staining solution were purchased from Servicebio (Wuhan, China).
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7

Western Blotting of Liver Proteins

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For western blotting, liver lysates were collected in lysis buffer (150 mM NaCl, 20 mM Tris (pH = 7.4), 1 mM EDTA, 0.2% NP-40, 10% glycerol) with protease inhibitors using a Tissuelyser. Lysates were normalized to protein concentration, denatured, and run on Criterion precast PAGE gels (BioRad). The antibodies used in this study were ALT2 (MilliporeSigmaHPA051514), ALT1 (GPT Abcam ab202083), Complex III (Oxphos Cocktail; Abcam ab110413), GAPDH (Invitrogen AM4300), AKT (Cell Signaling Technology 2920), pThr308 AKT (Cell Signaling Technology 2920), pSer473 AKT (Cell Signaling Technology 2920), or tubulin (MilliporeSigmaMonoclonal Anti-α- Tubulin Clone B-5-1-2, T51668).
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8

Protein Immunoblot Analysis of AKT and JNK

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Extracts (20–50 µg of protein) were examined by protein immunoblot analysis by probing with antibodies to AKT (Cell Signaling Technology 9272; RRID: AB_329827), pSer473 AKT (Cell Signaling Technology 9271; RRID: AB_329825), pThr308 AKT (Cell Signaling Technology 4056; RRID: AB_331163), JNK1/2 (BD Biosciences 554285, RRID: AB_395344), GAPDH (Santa Cruz Biotechnology sc-25778, RRID: AB_10167668), and αTubulin (clone B-5-1-2; Millipore-Sigma T5168; :RRID: 477579). IRDye 680LT-conjugated donkey anti-mouse immunoglobulin G (IgG) antibody (LI-COR Biosciences 926-68022, RRID: AB_10715072) and IRDye 800CW conjugated-goat anti-rabbit IgG (LI-COR Biosciences 926-32211, RRID: AB_621843) were used to detect and quantitate immune complexes with the Odyssey infrared imaging system (LI-COR Biosciences).
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9

Western Blotting of Liver Proteins

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For western blotting, liver lysates were collected in lysis buffer (150 mM NaCl, 20 mM Tris (pH = 7.4), 1 mM EDTA, 0.2% NP-40, 10% glycerol) with protease inhibitors using a Tissuelyser. Lysates were normalized to protein concentration, denatured, and run on Criterion precast PAGE gels (BioRad). The antibodies used in this study were ALT2 (MilliporeSigmaHPA051514), ALT1 (GPT Abcam ab202083), Complex III (Oxphos Cocktail; Abcam ab110413), GAPDH (Invitrogen AM4300), AKT (Cell Signaling Technology 2920), pThr308 AKT (Cell Signaling Technology 2920), pSer473 AKT (Cell Signaling Technology 2920), or tubulin (MilliporeSigmaMonoclonal Anti-α- Tubulin Clone B-5-1-2, T51668).
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10

Western Blot Analysis of Akt Signaling

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Cells were washed three times with ice-cold PBS and homogenized in 2% SDS by sonication. Insoluble material was removed by centrifugation at 21,000 × g. Protein concentration was determined by bicinchoninic acid method (Thermo Scientific). 10 μg of protein was resolved by SDS-PAGE and transferred to PVDF membranes. Membranes were blocked in 5% skim milk powder in Tris-buffered saline for 1 h, followed by an overnight incubation at 4 °C with specific primary antibody solutions. Antibodies specific for pSer-473 Akt, pThr-308 AKT, pThr-642 TBC1D4, and Akt were from Cell Signaling Technology; GLUT4 antibody was made in-house; α-tubulin antibody was from Sigma; and 14-3-3β antibody was from Santa Cruz Biotechnology, Inc. Antibodies specific for PRDX2 were from Abcam, and PRDX3 antibody was from Abfrontier. Membranes were incubated with an appropriate secondary antibody for 1 h before signals were detected using ECL (Thermo Scientific or Millipore) on the Chemidoc MP (Bio-Rad). In some cases, IRDye700- or IRDye800-conjugated secondary antibodies were used and then scanned at the 700- and 800-nm channel using the Odyssey IR imager. Densitometry analysis of immunoblots was performed using ImageJ version 1.47.
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