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13 protocols using ly6c percp cy5

1

Lung Cell Isolation and Immunophenotyping

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Single-cell suspensions of the lung tissues were prepared by cutting them into small pieces followed by incubation in Dulbecco’s Modified Eagle Media (DMEM) containing 0.18 mg/mL Collagenase Type I (Sigma, St. Louis, MO, USA), 0.02 mg/mL DNase I (Sigma, St. Louis, MO, USA) for 1 h at 37 °C under constant rotation, followed by being mechanically passed through a 100 μm and 70 μm cell strainer sequentially. Erythrocytes were lysed using RBC lysis buffer (155 mM NH4Cl, 12 mM NaHCO3, 0.1 mM EDTA). Cells were then counted and subjected to flow cytometry. Lymphoid and myeloid compartments were investigated in the lung samples of mice on various intervention diets. Antibodies used for flow cytometry analysis were as follows: CD64-PeCy7 (Clone X54-5/7.1), Ly6C-PerCPCy5.5 (Clone AL-21), CD11b-V450 (Clone M1/70), MHCII-APC (Clone M5/114.15.2), CD103-PE (Clone M290), CD11c-A700 (Clone HL3), SiglecF-APCCy7 (Clone E5-2440), Ly6G-FITC (Clone 1A8), PD-1-FITC (Clone 29F.1A12), CD4-BV510 (Clone RM4-5), CD44-PE (Clone IM7), NK1.1-APCCy7 (Clone PK136), CD3-A700 (Clone 500A2), CD62L-V450 (Clone MEL-14), CD19-PerCPCy5.5 (Clone 1D3), CD8-APC (Clone 53-6.7), and KLRG1-BV786 (Clone 2F1) purchased from BD (Biosciences, Johannesburg, SA) and eBioscience (ThermoFisher, Johannesburg, SA) [29 (link),30 (link)].
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2

FcγR Expression Analysis in Macrophages

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Human and murine FcγR staining is described elsewhere (26 (link)). Fluorescently conjugated mAb were from BD Biosciences, AbDSerotec, eBioscience or made in-house. hMDM were stained with anti-human CD40 Alexafluor (AF)488 (Clone ChiLob 7/6), CD38 AF488 (Clone AT 13/5), both in-house, and CD11b PE (eBioscience). mBMDM/Splenocytes were stained with anti-mouse CD11b PE, Ly6C PerCpCy5.5, Ly6G PeCy7 (eBioscience), F4/80 APC (AbD Serotec). Samples were acquired on FACS calibur/canto II (BD Bioscience) and data analysed with FCS express (DeNovo Software). FcγR A:I ratio for hMDM was calculated as: MFI for FcγRI*FcγRIIA*FcγRIII/FcγRIIB (FcγRI*FcγRIII*FcγRIV/FcγRII for mBMDM) giving a value of x for NT macrophage. The results for each test condition were then divided by x so that unstimulated macrophages received a ratio of 1.
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3

Quantification of FcγR Expression

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Single cell suspensions were prepared from C57BL/6 mouse spleens. 1×106 cells were stained with CD11b PE, Ly6C PerCP-Cy5.5, Ly6G PE-Cy7 (eBioscience), F4/80 APC (AbD Serotec) and FcγR antibodies as previously described (16 (link), 17 (link)). Data were acquired on the FACS Canto II (BD Biosciences) and analyzed with FCS express (DeNovo Software). FcγR expression by macrophages (F4/80+), monocytes (CD11b+Ly6C+) and neutrophils (CD11b+Ly6G+) is demonstrated by mean fluorescence intensity.
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4

Immune Cell Profiling in Rat and Mouse Blood

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To measure the dynamic changes in the proportions of immune cell populations in the peripheral blood of rats, 50 μl of blood samples was taken for flow cytometry analysis. After lysing red blood cells, the remaining leukocytes were resuspended in PBS containing 2% FBS, and then were stained with HIS48-FITC (eBioscience), CD11bc-allophycocyanin (BioLegend), CD68-PE (Biolegend) or CD206-PerCP (Abcam) for 30 min at 4°C. On the other hand, mice cells were analyzed by staining with CD11b-FITC (BD Bioscience), Gr-1-PE, Ly6G-APC (BD Bioscience), Ly6C-PerCP-Cy5.5 (eBioscience), F4/80-PE (eBioscience) or CD206-PerCP (Biolegend, #141716). Acquisition of flow cytometry data from the BD FACSCantoII flow cytometer was performed using FACSDiva software (BD Biosciences). The number of events analyzed was 10,000 per sample. Analysis was performed using FlowJo software (Tree Star).
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5

Isolation and Characterization of Uterine Immune Cells

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Uterine samples consisting of maternal decidua and myometrium were
collected 6 h after ultrapure LPS challenge (or saline) on d16 of gestation
from WT and BAFF reporter (RFP48 (link)) mice. Immune cells were isolated using enzymatic
digestion. Briefly, uterine tissue was dissected and finely minced. Tissue
was digested using Liberase TM (21 µg/mL, Roche) and Dnase I (8.8
µg/mL, Roche) in DMEM containing HEPES and 2% BSA. Tissue was
incubated at 37°C for 30 min at 220 RPM. After digestion, cells were
filtered through a 100 µM strainer and centrifuged at 800 g for 5
min. Following red blood cell lysis, single cell suspensions were stained
with Live/Dead (Zombie UV Dye: Biolegend) and directly conjugated monoclonal
antibodies to CD45-PE-Dazzle594 (Biolegend, 104), F4/80-AF700 (Biolegend,
BM8), TCRb-APC-ef780 (Invitrogen, H57–597), CD11b-ef450 (Biolegend,
17A2), CD8-BV510 (Biolegend, 53–6.7), B220-BV605 (Biolegend,
RA3–6B2), NK1.1-FITC (Biolegend, PK136), CD11c-BV711 (Biolegend,
N418), Ly6G-APC (Invitrogen, RB6–8C5), Ly6C-PerCP-Cy5.5 (eBioscience,
HK1.4). Data was collected using LSR Fortessa (BD) and analyzed using FlowJo
X software (vX10).
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6

Comprehensive Lung and Spleen Cell Analysis

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Lung tissue was chopped and digested with collagenase-D (1 mg/ml; Roche) and DNase I (10 mg/ml; Sigma-Aldrich) for 1 h at 37°C with agitation. To detect cytokines, brefeldin A (5 µg/ml) was added during the digest. Lungs or spleens were passed through a 70-µm cell strainer to a obtain single-cell suspension, followed by RBC lysis with ACK buffer. The cells were incubated with Fcγblock (anti-CD16/CD32 antibody, BD Biosciences) (1:100) to block IgG Fc receptors. Cells were incubated with LIVE/DEAD Aqua (Invitrogen), followed by surface staining with fluorochrome-conjugated anti-mouse Abs for various markers. The following surface Abs were used: CD69-FITC, CD3-APC-ef780, MHCII-APC, Ly6C-PerCP-Cy5.5, CD86-FITC, CD11b-APC-ef780, CD38-ef450, F4/80-PE-Cy5, CD49d-PerCP-ef710, CD3-AF700, CD8-APC-ef780, CD44-PE-Cy7, CD4-PE-Cy5 (eBiosciences), CD44-BV605, CD4-BV785, CD103-PE, Ly6G-BV605, CD80-PE-Dazzle594 (BioLegend), CD62L-PE-CF594, SiglecF-PE, CD103-BV786 (BD Biosciences). For detection of intracellular cytokines, cells were fixed in 2% PFA and permeabilized with 0.5% saponin (Sigma-Aldrich, Ireland), followed by staining with IL-17A–V450 (BD Biosciences). Fluorescence minus one samples were used as controls. Flow cytometric analysis was performed on an LSR Fortessa, and data were acquired using Diva software (BD Biosciences). The results were analyzed using FlowJo software (TreeStar).
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7

Comprehensive Flow Cytometry Phenotyping

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For flow cytometric analysis, cells were fixed in fixation/permeabilization buffer (eBioscience) overnight, washed and blocked in PBS containing 1% bovine serum albumin (BSA) and rat immunoglobulin (1µg/ml, Sigma, St. Louis, USA). Cells were stained with F4/80 APC or PerCP-Cy5.5, CD11b APC or FITC, Gr1 PE-Cy7, CD80 FITC, CD86 PE or APC, MHC-II PE or FITC, CD40 PE, Ly6C PerCP-Cy5.5 (all eBioscience) and SiglecF PE (BD Biosciences). To stain for RELMα-positivity, cells were pre-incubated in permeabilization buffer (eBioscience) and then stained with anti-RELMα (Peprotech, New Jersey, USA). Subsequently, cells were washed twice in permeabilization buffer and a secondary antibody (goat anti-rabbit Alexa488, Invitrogen, Carlsbad, USA) was used. As a control unspecific and isotope identical Alexa488 antibody (Invitrogen) was used. Data was acquired using a BD FACS Canto and BD FACSDiva software; for generation of figures and plots FlowJo software (Tree Star, Ashland, USA) was used.
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8

Multicolor Flow Cytometry Analysis of Immune Cells

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Cell suspensions from SPL, mLN, and cLP were analyzed by flow cytometry. Conventional CD4+ T cells and Tregs were stained with anti-CD3ε and anti-CD4 mAbs (BD Biosciences, San Jose, CA) and intracytoplasmic anti-foxp3 mAbs (eBioscience, San Diego, CA). Neutrophils were stained with Gr-1-FITC, CD11b-PECy7, and Ly6G-AF647 mAbs (eBioscience). Plasmacytoid dendritic cells (pDCs) and conventional dendritic cells (cDCs) were stained with MHCII-FITC, CD11b-PECy7, PDCA-1-AF647, and CD11c-APCCy7 mAbs with a lineage-negative mAb cocktail containing B220-biotin, CD3ε-biotin, Ly6G-biotin (eBioscience) and PerCP-Cy5.5-conjugated streptavidin. The cDC subsets were stained with MHCII-FITC, CD11c-APCCy7, CD11b-PECy7, and CD103-PE mAbs with a lineage-negative mAb cocktail containing B220-biotin, CD3ε-biotin, Ly6G-biotin (eBioscience) and PerCP-Cy5.5-conjugated streptavidin (eBioscience). Monocytes and macrophages (MΦ) were stained with Gr-1-FITC, MHCII-PE, Ly6C-PerCP-Cy5.5, CD11b-PECy7, Ly6G-APC, and CD11c-APCCy7 mAbs (eBioscience). Blocking of FcγR binding was performed using mouse and rat serum (Jackson ImmunoResearch, West Grove, PA). Cells were analyzed on a FACS Canto II (BD Biosciences). Data were collected using FACS Diva software (BD Biosciences) and analyzed with FlowJo software (TreeStar, Ashland, OR).
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9

Isolation of Murine Splenic Myeloid-Derived Suppressor Cells

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To obtain individual splenic cells, murine spleens were mechanically dissociated, passed through a 75‐μm cellular sieve and then through a 30‐μm nylon mesh (Catalog number: 130‐041‐407; Pre‐Separation Filters; MiltenyiBiotec, Bergisch Gladbach, Germany). Red blood cells (RBC) were lysed with ACK Lysis Buffer (Catalog number: 420301; BioLegend, San Diego, California, USA). Cells were washed with phosphate buffered saline (PBS) and counted. Splenic cells were marked with specific fluorophore‐conjugated anti‐mouse antibodies in PBS for 15 minutes in the dark. Fluorophore‐conjugated antibodies used in this study include CD11b‐APC (Catalog number: 17‐0112‐81; M1/70; eBioscience, San Diego, California, USA), Ly6G‐PE (Catalog number: 551461; 1A8; BD Biosciences, Franklin Lakes, New Jersey, USA), and Ly6C‐PerCP‐Cy5.5 (Catalog number: 45‐5932‐82; HK1.4; eBioscience). M‐MDSCs were isolated by MoFloFlow Cytometry (Dakocytomation), and cell debris was excluded using a SSC/FSC gate. CD11b‐positive cells were gated, and then Ly6GLy6Chigh cells were isolated as M‐MDSCs or their counterparts (from tumor‐free mice) and Ly6G+Ly6c+/low cells as G‐MDSCs or their counterparts. Purity was over 90%.
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10

Macrophage Isolation from Tissue

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Tissues were digested using collagenase type I (0.2% w/v; Sigma-Aldrich) to obtain dissociated single cells. Cells were blocked with an anti-CD16/CD32 antibody (BD Pharmingen, San Jose, CA). Next, the cells were incubated with antimouse CD11b-phosphatidylethanolamine, Ly6C-PerCp-Cy5.5 (both from eBioscience, San Diego, CA), and F4/ 80-APC (Biolegend, San Diego, CA) antibodies at 4 C for 30 minutes. Then, the cells were washed and analyzed using a BD ACCURI C6 flow cytometer (BD Pharmingen). CD11b þ F4/80 þ cells were considered macrophages.
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