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7 protocols using gatan oneview camera

1

Ultrastructural Analysis of Skin Samples

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Skin samples were thawed at RT in PBS and cut to 2 × 2 cm2 sections. Each skin sample was treated with the indicated dose of drug for the indicated time. The appropriate sample was then cut into 1 cm thick slices that were fixed in 3% glutaraldehyde in 0.1 M sodium cacodylate buffer, pH 7.3 for 2 h then washed 3 × 10 min in 0.1 M sodium cacodylate buffer, pH 7.3. Samples were then post-fixed in 1% osmium tetroxide, 0.1 M sodium cacodylate for 45 min at RT, then washed 3 × 10 min in a 0.1 M sodium cacodylate buffer. Samples were then dehydrated in 50%, 70%, 90% and 100% ethanol for 3 × 15 min each followed by 2 × 10 min in propylene oxide and then embedded in TAAB812 resin. Ultrathin sections were cut using a Lecia Ultracut S ultramicrotome at a thickness of 60 nm, stained with 5% uranyl acetate and 2% lead citrate and imaged on a JEOL JEM-1400 TEM (JEOL, Ltd., Akishima, Japan) equipped with Gatan OneView camera (Gatan, Pleasanton, CA, USA) at King’s Buildings at The University of Edinburgh.
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2

TEM Analysis of Marine Invertebrate Tissue

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Specimens were carefully anesthetized with isotonic magnesium chloride and afterwards fixed with 2 % glutaraldehyde in 0.1 M osmolarity-adjusted cacodylate buffer over night at room temperature (RT) and afterwards rinsed and stored in 0.1 M cacodylate buffer. The animals were postfixed in 2 % OsO4 in 0.05 M K3FeCN6-solution for 1 h and before embedding in Araldite Epon-812 using standard protocol and polymerization for 20–24 h at 50 °C.
For TEM-analysis, the block was trimmed to the object and sectioned into 40 nm sections using a Leica EM UC7 ultratome (LEICA MICROSYSTEMS, Wetzlar, Germany). Ultrathin section were mounted on Formvar-coated 2x1mm slot grids, contrasted with 2 % uranyle acetate- and 4 % lead citrate-solution and examined using a JEOL JEM 1010-Transmission Electron Microscope (TEM, JEOL Ltd., Tokyo, Japan) in combination with a digital GATAN OneView camera (GATAN, INC., Pleasanton, CA, United States). The fixation and preparation caused artifacts such as the slight separation of the epidermis from the internal organs of the animal.
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3

Nanoparticle Characterization and Degradation

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A Malvern Zetasizer Nano (Malvern Panalytical Ltd.) was used to determine the hydrodynamic diameter and zeta potential of the nanoparticles. A Thermo Scientific Nicolet 6700 FTIR instrument fitted with a Smart iTR diamond ATR fixture was used to determine the FTIR spectra of the nanoparticles. A Genesys 150 UV/VIS Spectrophotometer (Thermo Fisher Scientific, Inc.) was used to evaluate the absorbance of FAM-peptide and a NanoSight LM10-HSB/GFT14 (Malvern Panalytical Ltd.) was used to determine the concentration of pSiNPs to calculate the number of peptides conjugated per pSiNP. For degradation studies, 0.5 mg/mL of lysozyme-loaded pSiNPs surface modified with PEG and CAQK were incubated in PBS at 37 °C. At 0, 12, 24, and 48 hours, aliquots of degraded nanoparticles were removed from the stock, pelleted, and resuspended into ethanol and loaded onto 42 μm formvar/carbon 400 mesh copper grids (Ted Pella, Inc.) and dried. The stock nanoparticles were similarly pelleted at each timepoint and resuspended in fresh PBS to ensure that degradation would not be stalled by the solubility of silicic acid in the supernatant.29 (link) TEM images were obtained on a JEOL 1400 plus electron microscope (JEOL USA, Inc.) operated at 80KeV and equipped with a Gatan Oneview camera (Gatan, Inc.).
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4

In-situ Liquid Cell TEM Synthesis

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The liquid cell is made up of two chips: (1) a heater chip with a 50 nm thick silicon nitride (SiNx) membrane window (Hummingbird Scientific, Lacey, WA, USA) and (2) bottom chip with a 25 nm SiNx window (Supplementary Fig. 1) that we fabricated in-house50 (link). These chips were first plasma treated before experiments to make their SiNx membrane surfaces hydrophilic, so that liquid can easily wet the interior of the liquid cell. Next, ~500 nL of the nanocube solution was drop casted onto the heater chip and allowed to dry. Then, the liquid cell is assembled within a liquid cell TEM holder (Hummingbird Scientific, Lacey, WA, USA). These procedures are described in detail in the Supplementary Methods.
The holder was loaded into a JEOL 2010FEG TEM (JEOL Ltd., Tokyo, Japan) operated at 200 kV. After heating the Ag nanocubes to the targeted temperature (±10 °C), 1.0 mM of the Au precursor solution was flowed into the cell through the fluid tubing using a syringe pump at a rate of 20 µL per min. Images were recorded with Gatan OneView camera (Gatan Inc, Pleasanton, CA, USA) at a rate of 25 frames per second. The image processing algorithm used to extract the etch rates of nanocubes is described in the Supplementary Methods.
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5

Visualizing VCC-Curcumin Interactions via TEM

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Transmission electron microscopy (TEM) was used to visualize the assembly state of VCC upon association with the insoluble fraction of curcumin in the aqueous buffer. For this, 10 μl from a stock solution of curcumin dissolved in DMSO (20 mg/ml) was added to VCC (2 μM) in a final reaction volume of 1 ml in PBS, and was incubated for 1 h at room temperature. For the control reaction, 20 μl from a stock solution of curcumin dissolved in DMSO (20 mg/ml) was added to the reaction volume of 1 ml in PBS without VCC. The reaction mixtures were subjected to centrifugation at 10,000 rpm for 10 min. The pellets were re-suspended in 200 μl PBS. Samples (4μl) were added to the plasma cleaned 400 mesh copper grids with continuous carbon support (Aritech Chemazone Pvt. Limited), and incubated for 1 min. The excess amount of sample was blotted off and samples were negatively stained with 2% uranyl acetate for 1 min. The excess uranyl acetate was blotted off and the samples were dried at room temperature. The samples were analyzed on a JEM-F200 electron microscope (Jeol Inc.) operating at 200 kV, and images were recorded with a Gatan OneView camera (Gatan Inc.) at a nominal magnification of 60,000×, with a defocus −2.5 μm and the cumulative fluence for the images was limited to ∼60 electrons/pixel.
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6

In Situ Heating TEM Characterization

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Two TEMs were used for in situ heating studies: Thermofisher Titan S/TEM (Thermo Fisher Scientific Ltd., Hillsboro, OR, USA) equipped with a Bruker Xflash 6 T | 30 energy-dispersive X-ray (EDX) spectrometer (Bruker, Billerica, MA, USA) and an aberration-corrected JEOL ARM300F (JEOL Ltd., Tokyo, Japan). Both TEMs were operated with an accelerating voltage of 300 kV. The Wildfire heating holders (DENSsolutions, Delft, Netherlands) were used for heating the NPs during in situ observations. Typical electron fluxes used for in situ imaging were in the range of 200−6000 e Å−2 s−1. Image series were acquired with two different cameras: a Gatan K2 IS camera (Gatan Inc., Pleasanton, CA, USA) on the Thermofisher Titan S/TEM and a Gatan OneView camera (Gatan Inc., Pleasanton, CA, USA) on the JEOL ARM300F. Inverse FFT images in Fig. 1c were obtained by separately filtering and then combining fcc and B2 spots in FFT patterns in Fig. 1a, and the same processing was used for Supplementary Figs. 3, 4, 10, and 14.
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7

Ultrastructural Examination of Fish Gill

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For ultrastructural examination, a 4-5 filament wide portion of gill from the second left gill arch containing a visible lesion was taken from three fish from Group D (Infection level category; very mild) and a similar sized portion of gill from the second left gill arch was taken from three fish from Group A (Infection level category; clear). Samples were fixed in 3% glutaraldehyde for 3 h, washed in PBS (3 x 10 min) and stored at 4 o C. Samples were then washed in 0.1 M sodium cacodylate buffer (3 x 10 min), post-fixed in 1% osmium tetroxide in 0.1 M sodium cacodylate (45 min) and finally washed in 0.1 M sodium cacodylate buffer (3 x 10 min). Samples were dehydrated in a series of graded ethanol (50, 70, 90 and 100%) in propylene oxide (2 x 10 min) and embedded in TAAB 812 resin (TAAB Laboratories Equipment, Berkshire, UK). Sections were cut at 60 nm and subsequently stained using uranyl acetate and lead citrate for contrast then examined under JEOL JEM-1400 Plus transmission electron microscope (JEOL, USA). Digital images were collected from a GATAN one view camera (GATAN, USA).
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