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5 protocols using mcl 1 antibody

1

Immunoprecipitation of Bim and Mcl-1 Proteins

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Cells were lysed in NP40 lysis buffer (0.5% NP40, 50 mM Tris pH 8, 120 mM NaCl, with the addition of PhosSTOP phosphatase inhibitor tablets (Roche, #4906845001) and cOmplete Mini EDTA-free Protease Inhibitor Cocktail (Roche, #11836170001). 250 μg of total lysate was incubated with 2.5 μl Bim antibody (Cell Signaling, #2819), 1 μg Mcl-1 antibody (Santa Cruz, #sc-12756), normal rabbit IgG (Millipore, #12-370) or normal mouse IgG (Millipore, #12-371) overnight at 4°C. The following day 50 μl of Protein A (Pierce, #88846) or Protein G (Pierce, #88847) magnetic beads were incubated with lysates for 1 hour for Bim IP and Mcl-1 IP, respectively. Beads were washed 3 times with lysis buffer and incubated in 2x sample buffer for 15 min at room temperature. Eluted proteins were separated from the beads and boiled for 10 min. For Bim IP, anti-USP9X Cell Signaling #14898, anti-Mcl-1 Cell Signaling #5453 and anti-Bim Cell Signaling #2819 antibodies were used for western blot detection. For Mcl-1 IP, anti-Mcl-1 Abcam #ab32087 and anti-Bim Cell Signaling #2819 antibodies were used for western blot detection.
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2

Mcl-1 Binding Assay for Small Molecules

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Human
breast cancer 2LMP cells, a subclone of the MDA-MB-231 cell line,
were lysed in CHAPS buffer (10 mM HEPES (pH 7.4), 2.5 mM EDTA, 150
mM NaCl, 1.0% CHAP). Precleared cell lysates were incubated with different
concentrations of compounds followed by incubation with biotinylated
Noxa BH3 peptide (18–43) and streptavidin–agarose beads
to pull-down Mcl-1 protein bound to Noxa peptide. Beads were washed
with CHAPS buffer, and Mcl-1 protein was eluted by boiling in SDS-PAGE
sample buffer and analyzed by Western blotting using Mcl-1 antibody
(Santa Cruz).
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3

Immunoblot Analysis of Apoptosis Regulators

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Both floating and adherent cells were collected and lysed using 2× Laemmli buffer (Bio-Rad, Hercules, CA, USA). Samples were analyzed using the immunoblot analysis protocol as described in [59 (link),60 (link)]. Immunoblot images presented in this manuscript are from a representative experiment carried out in triplicate. The antibody dilutions were used at the manufactures’ recommendation. The following antibodies were purchased from Cell Signaling Technologies (Danvers, MA, USA): PARP (#9532), BID (#2002), BIM (#2933), BCL2 (#15071), α/β tubulin (#2148), and HRP-conjugated goat anti-mouse and anti-rabbit antibodies. The NOXA antibody (# OP180) was obtained from Millipore Sigma (St. Louis, MO, USA) and MCL1 antibody (#819) was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Please see Figures S7–S11 for uncropped images of immunoblots presented in the Main and Supplementary Figures.
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4

Protein Expression Analysis in HCT116 Cells

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After HCT116 cells were treated as indicated, the cells were harvested and washed twice by PBS and lysed in RIPA buffer (20 mM Tris-HCl, 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% NP-40, 1% sodium deoxycholate, 1 mM phenylmethlsulfonyl fluoride, 2.5 mM sodium pyrophosphate, 1 mM β-glycerophosphate, 1 mM sodium vanadate, 1 μg/ml leupeptin). Antibodies used are listed below: β-actin antibody (Cell Signaling, 4967S), LC3A/B antibody (Cell Signaling, 4108S), Grp78 antibody (Cell Signaling, 3177S), p53 antibody (Santa Cruz SC-126), Puma antibody (Proteintech, 55120–1-AP), and Mcl-1 antibody (Santa Cruz, SC-819 and SC-12756). Immunoblot was detected by Li-Cor Odyssey image reader or with ECL western blot detection kit.
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5

Protein Expression Analysis in CLL Cells

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CLL cell lysates were made with the Complete Lysis-M buffer supplemented with phosphatase inhibitor cocktail tablets (Roche Applied Science). Proteins were initially separated by electrophoresis, and after transfer to nitrocellulose, immunoblots were probed with GLUT1 antibody (Abcam®), GLUT4 antibody (Dr. S Cushman, NIDDK), GAPDH antibody (EMD Millipore), PARP antibody (BD Pharmingen) and MCL-1 antibody (Santa Cruz Biotechnology) followed by secondary horse-radish conjugated antibodies.
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