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5 protocols using volocity visualization software

1

Quantitative Analysis of METTL14 Expression in Ovarian Cancer

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IHC performed with ovarian cancer tissue microarray and animal tissue specimens. For IHC, the samples were incubated with primary antibody, followed by incubation with HRP-conjugated secondary antibody. METTL14 FISH was performed to analyze the copy numbers of the METTL14 gene in ovarian cancer and normal tissue samples. Briefly, tissue sections were deparaffinized in xylene, rehydrated in a series of ethanol solutions, and then subjected to FISH with the METTL14 FISH probe (1–2.5 nM) in a buffer containing 2× saline-sodium citrate, 25% formamide, 10% dextran sulfate, and 1 mg/mL yeast in a humidified chamber for 3–4 h at 42°C, according to the manufacturer’s recommended protocol. The specific FISH signal was detected as brown punctate dots. Images were captured using a Nikon 90i microscope-equipped orca ER camera (Hamamatsu Photonics, Hamamatsu, Japan) with a 60×, 1.4 N.A. VC objective lens and were quantified using the Volocity visualization software (Perkin elmer, Waltham, MA, USA).
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2

Worm Imaging Using Confocal Microscopy

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For imaging purposes, 6 to 10 worms were immobilized in 35 mm optical glass bottomed dishes (MatTek Corporation, Ashland, MA) with 6 µl of 0.1 mM sodium azide in PBS. Confocal images were taken using a Leica TCS SP8 microscope. GFP fluorescence was illuminated using a 488 nm argon laser line with a 63×1.4NA oil Apochromat CS2 objective. Fluorescence was captured using a spectral HyD detector over ∼100 Z-planes. Confocal images were visualized, rendered and analyzed using Volocity Visualization Software (v 5.4, PerkinElmer).
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3

Immunohistochemistry and Confocal Imaging

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Embryos were fixed in 4% paraformaldehyde/heptane for all immunohistochemistry. Primary antibodies were detected using Alexa-conjugated secondary antibodies (1:400; Invitrogen). Embryos were mounted in Vectashield (Vector Laboratories, CA) or ProLong Gold antifade reagent (Invitrogen). Double or triple staining using anti-β-galactosidase or anti-GFP was used to identify the presence of marked balancer chromosomes. For antibody sources and concentrations, please see Supplemental Experimental Procedures.
Fluorescent images were acquired on a Leica SP5 laser-scanning confocal microscope equipped with a 631.4 NA HCX PL Apochromat oil objective and LAS AF 2.2 software. Images were processed using Adobe Photoshop CS4. Maximum intensity projections of confocal z-stacks were rendered using Volocity Visualization software (Improvision).
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4

Embryo Imaging Using Confocal Microscopy

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Embryos were raised at 25°C, collected, dechorinated and mounted on a Teflon membrane in Halocarbon oil 700 (Halocarbon Products Corp., Series 700, 9002-83-9). Images were acquired every 30 or 60 sec as indicated, single z = 0.5μm 18-20mm total on an upright Leica SP5 laser scanning confocal microscope equipped with a 63X 1.4 NA HCX PL Apochromat oil objective and LAS AF 2.2 software. Maximum intensity projections of confocal Z-stacks were rendered using Volocity visualization software (Improvision).
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5

Embryo Immunostaining and Confocal Microscopy

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Embryos were collected, fixed in 4% PFA, and stained according to standard lab protocols [19 (link)]. Antibodies were used at the following concentrations: α-Dia (1:500) (S. Wasserman), α-Duf (1:200) (K.-F. Fischbach), α-Sns (1:250) (S. Abmayr), α-WASp (1:500) (E. Schejter), α-SCAR(1:100) (J Zallen) [85 (link)], α-Blow (1:100) (E. Chen), α-GFP (1:500)(Invitrogen A11120), α-dsRed (1: 500) (Clontech 32392), Alexa Fluor 647-phalloidin (1:100) (Invitrogen A22287). For secondary antibodies, Alexa Fluor 488-, Alexa Fluor 555-, and Alexa Fluor 647-conjugated fluorescent secondary antibodies at 1:200 dilution (Invitrogen) were used. Fluorescent images were acquired on a Leica SP5 laser scanning confocal microscope equipped with a 63X 1.4 NA HCX PL Apochromat oil objective and LAS AF 2.2 software. Maximum intensity projections of confocal Z-stacks were rendered using Volocity visualization software (Improvision). Cell outlines of somatic myoblasts and myotubes were determined in saturated images, and cells were false colored using Adobe Photoshop CS4 (S1 Fig).
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