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Hindiii restriction endonuclease

Manufactured by Takara Bio
Sourced in China, Japan

HindIII is a type II restriction endonuclease that recognizes and cleaves the DNA sequence 5'-AAGCTT-3'. It is isolated from the bacterium Haemophilus influenzae.

Automatically generated - may contain errors

3 protocols using hindiii restriction endonuclease

1

Rearranged PCV3 Gene Amplification and Cyclization

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To amplify the newly synthesized rearranged PCV3 gene, PCV3 M1, PCV3 L2 primers, and KFX-101 high fidelity enzymes (TOYOBO, Japan) were adopted. The final volume of reaction fluid reached 100 μL. The PCR cycling conditions included: pre-denaturation at 94°C for 2 min, 30 cycles at 98°C for 10 s, 58°C for 30 s, and 68°C for 2 min, as well as the final extension for 10 min at 68°C. PCR products were preserved at 16°C for subsequent experiments.
The amplified PCR products of rearranged PCV3 gene were purified following the instructions of the DNA Purification Kit (Takara Bio, Dalian, China). Subsequently, the purified PCR product was digested by HindIII restriction endonuclease (NEB, Beijing, China) and then incubated in a water bath at 37°C for 5 h. Then, the digested products of HindIII restriction endonuclease were purified following the manufacturer’s instructions (Takara Bio, Dalian, China). Next, the purified DNA fragments were connected based on T4 DNA ligase instructions (NEB, Beijing, China) at 16°C for 12 h. Last, the cyclized PCV3 DNA was harvested.
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2

Optimized gD Gene Cloning and Expression

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The nucleotide sequence for envelope glycoprotein D gene of BV strain E2490 has been deposited in the GenBank database and the gD gene was optimized with the following accession number, NC-004812. The transmembrane region of gG was analyzed by the SOSUI system, as described previously (26 ). The extracellular domain of viral glycoprotein usually is the key point for eliciting host antibodies. Therefore, the extracellular region of gD was chosen for codon optimization and synthesized. The EcoR I and Hind III restriction endonuclease (TaKaRa, Japan) sites in the sequence were then introduced to allow ligation of the entire gD sequence into pET-32 (+) (Novagen, Germany); an amino-terminal histidine tag contained the prokaryotic expression vector.
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3

Genotyping LPL HindIII Polymorphism

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Placental tissue was obtained after childbirth for each subject. Total genomic DNA was extracted from 0.1 g placental tissue using a Kangwei Genome Extraction Kit (Beijing, China). The sequences of the primers designed to amplify a 700 bp amplicon including the LPL HindIII polymorphic locus from genomic DNA were as follows: LPL-F: 5'-TGA AGC TCA AAT GGA AGA GT-3'; LPL-R: 5'-TAC AAG CAA ATG' ACT AAA-3'. The following reaction system was prepared: 25 μL 2X Primer STAR Mix Premix (TaKaRa, Dalian, China), 1 μL LPL-F, 1 μL LPL-R, and 1 μL template, supplemented to 50 μL with deionized water. PCR was performed according to the following reaction conditions: denaturation at 98°C for 5 min, followed by 30 cycles of denaturation at 98°C for 30 s, annealing at 58°C for 30 s and extension at 72°C for 1 min, with a final extension at 72°C for 7 min. The PCR products (5 μL) were analyzed using agarose gel electrophoresis, and the specificity of the PCR amplicon band was observed. Restriction enzyme digestion was performed by preparing a 20 μL reaction mix containing 17 μL PCR product, 2 μL 10X HindIII restriction endonuclease buffer and 1 μL HindIII restriction endonuclease (TaKaRa) that was placed in a 37°C water bath for 4 h, followed by analysis with 2% agarose gel electrophoresis.
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