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3 protocols using anti eif2

1

Comprehensive Protein Expression Analysis

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Anti-CHOP, anti-AKT, anti-Caspase3, anti- EIF2, anti-PERK, anti-XBP1, anti-GAPDH, anti-GRP78, anti-Bax, anti-Bak, anti-Bcl2, anti-Bim, anti-PUMA (Cell Signaling Technology, MA, USA). Goat anti-mouse and anti-rabbit antibodies conjugated with horseradish peroxidase were secondary antibodies (1:2,000, Jackson ImmunoResearch, PA, USA).
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2

Optimization and Validation of LMPTP Inhibitor

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LMPTP inhibitor Compd. 23 was generated as described (14 (link)) and formulated in rodent chow at 0.1% (w/w) by Research Diets. CRISPR-Cas9 plasmids were purchased from ATUM. Pierce d-Luciferin monopotassium salt was purchased from Thermo Fisher Scientific and reconstituted using phosphate-buffered saline (PBS). For in vitro experiments, docetaxel and cabazitaxel were purchased from Selleckchem and reconstituted in sterile dimethyl sulfoxide (DMSO). The anti–phospho–eIF2-Ser51 (#3398), anti-eIF2 (#9722), anti-NRF2 (#12721), anti-ATF4 (#11815), anti–glyceraldehyde 3-phosphate dehydrogenase (#5174), anti–phospho-H2AX (#9718), anti-H2AX (#2595), and anti-pTyr (pY1000; #8954) antibodies were purchased from Cell Signaling Technology (CST). The rabbit anti-LMPTP antibody was described in (52 (link)). The mouse anti-LMPTP antibody (#sc-100343) was purchased from Santa Cruz Biotechnology. The anti-GSS antibodies were purchased from Thermo Fisher Scientific (#PA5-89891) or Santa Cruz Biotechnology (#sc-166882). Anti-rabbit (#NA934-1ML) and anti-mouse (#NA931-1ML) secondary antibodies were purchased from Thermo Fisher Scientific. TrueBlot anti-rabbit (#RL18-8816-31) and anti-mouse (#RL18-8817-31) secondary antibodies were purchased from Rockland. GSH-MEE (#353905) was purchased from Sigma-Aldrich. Unless otherwise specified, chemicals and other reagents were purchased from Sigma-Aldrich.
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3

Retinal Protein Extraction and Analysis

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Retinas were lysed as previously described to obtain nuclear-enriched proteins and total cellular proteins [24] . The purity of enriched lysates was checked by immunoblotting using a nuclear marker (anti-Histone H3 1:3000; Bethyl Laboratories) or a cytosol marker (antipan-actin, 1:3000; Millipore). Equivalent amounts of protein extracts (20 g) were resolved using SDS-PAGE and immunoblottings were performed following standard procedures. The antibodies used for western blotting were: anti-II-spectrin (AA6, 1:2000; Enzo Life) [25] , anti-AIF (1: 1000; Calbiochem) [26] , anti-Caspase7 (1:1000; Cell Signaling), anti-eIF2 (1:1000; Cell Signaling), anti-NRF2 (1:2000; Invitrogen), anti-phosphorylated-IRE1 (1:2000; Novus Biologicals), anti-phosphorylated-PERK (1:1000; Cell Signaling), antiphosphorylated-eIF2 (1:1000; Cell Signaling). Antibodies specificity is shown in Fig. S2.
Each blot analyzed proteins derived from 4 retinas pooled together and 3 independent pools from 3 different litters were used as biological replicates, one representative blot is shown.
The entire blots are shown in Fig. S3.
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