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5 protocols using pdgfra

1

Protein Expression Profiling via Western Blot

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ACSL4, SAR1A, PDE7B, PDGFRA, and MAP2K1 were detected by western blot analysis following the overexpression of miR-34c or siRNA. Cells were lysed using M-PER Protein Extraction Reagent (Pierce, USA) supplemented with a protease inhibitor (PMSF). Protein concentrations of the extracts were measured with the BCA assay (Pierce, USA) and equalized with extraction reagent. Equal amounts of extracts were loaded and subjected to SDS-PAGE, followed by transfer onto nitrocellulose membranes. Primary antibodies (ACSL4, 1:500; SAR1A, 1:500; PDE7B, 1:800; PDGFRA, 1:500; and MAP2K1, 1:200) and horseradish peroxidase-coupled secondary antibodies (1:2000) were purchased from Abcam, USA. Membranes were probed using ultra-enhanced chemiluminescence western blotting detection reagents. GAPDH was used as an internal control. Protein abundance was analyzed using ImageJ tools.
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2

Western Blot Analysis of Protein Markers

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Cell lysis was done in chilled RIPA lysate buffer (Beyotime, China) with protease inhibitor and phosphatase inhibitor. Equal amounts of total protein were separated on SDS-PAGE gels at 100 V for 1.5 h, before transfer to 0.45 μm PVDF membrane (NEST, China). Blocking was done in 5% non-fat dry milk in TBST with subsequent overnight incubation with primary antibodies at 4 °C. Primary antibodies were against PDGFRA (1:1000, abcam), p-PDGFRα (1:1000, abcam),β-tubulin (1:1000, wanleibio, China), GAPDH (1:5000, abcam), vimentin (1:500, wanleibio, China), E-cadherin (1:500, wanleibio, China), ZEB1 (1:500, wanleibio, China), GPX4 (1:1000, abcam), NRF2 (1:1000, abcam) and SLC7A11 (1:1000, abcam). Upon three TBST washes, membranes were incubated with secondary antibody, before visualization with enhanced chemiluminescence (ECL) reagent (Yeasen, Shanghai, China).
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3

Western Blot Analysis of ERBB4 and PDGFRA

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Cells were lysed in ice using RIPA buffer containing the protease inhibitor PMSF (Auragene, China). The protein concentration was then measured with BCA kit (Auragene, China). Primary antibodies against ERBB4 (1:1,500, Abcam, Cambridge), PDGFRA (1:1,000, Abcam, Cambridge), and β-actin (1:1,000, Abcam, Cambridge) were incubated with the film at 4 °C overnight. Next, the film was incubated in goat anti-mouse/rabbit IgG (H + L)-HRP polymer (1:15,000, Auragene, China) for 40 minutes, and then exposed to ECL chromogenic solution (Auragene, China). Finally, Image-Pro Plus 6.0 software was used to quantitatively analyze the intensity of the protein bands.
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4

Multiplex Immunofluorescence Staining Protocol

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Multiplex staining was performed using TSA 7-color kit (D110071-50T, Yuanxibio), according to manufacturer’s instruction. The panel was PDGFRA (Cat# ab252922, Abcam), APOE (Cat #ab7817, Abcam), CD68 (Cat #97778, CST). Primary antibodies were sequentially applied, followed by horseradish peroxidase-conjugated secondary antibody incubation (1:1, Cat# DS9800, Lecia Biosystems; 1:1 Cat# A10011-6/A10012-6, WiSee Biotechnology), and tyramide signal amplification (M-D110051, WiSee Biotechnology). The slides were microwave heat-treated after each TSA operation. Nuclei were stained with DAPI (D1306, ThermoFisher) after all the antigens above being labeled. The stained slides were scanned to obtain multispectral images using the Pannoramic MIDI imaging system (3D HISTECH).
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5

Quantitative Western Blot Analysis of Key Cellular Proteins

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Protein levels were examined by western blot analysis. In brief, proteins lysed from cells were separated by SDS-electrophoresis and then transferred to a PVDF membrane. The membrane was blocked and incubated with primary antibodies. Antibodies against caprin-1 and G3BP1 were purchased from Proteintech (Wuhan, China). Antibodies against PCNA, pan-AKT, phospho-AKT Thr308, phospho-AKT Ser473, cyclin D1, mTOR, phospho-mTOR Ser2448, 4EBP1, and phospho-4EBP1 were purchased from Cell Signaling Technology (Danvers, USA). Antibodies against EGFR, phospho-EGFR Tyr1068, RPS3, RPS6, RPL4, eIF4A, eIF4B, eIF4E, eIF4G, PABP, IRS1, and PDGFRA were purchased from Abcam (Cambridge, USA). HRP-conjugated anti-rabbit and anti-mouse IgG antibodies (Cell Signaling Technology, USA) were used as the secondary antibodies. Protein detection was performed with a chemiluminescence system (Bio-Rad, USA).
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