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9 protocols using cd8 pe cy7

1

Isolation and Sorting of Leukocyte Subsets

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Peripheral blood mononuclear cells (PBMCs) of both patients were isolated by density gradient centrifugation using Ficoll-Hypaque (GE Healthcare, Uppsala, Sweden) and stained with the following antibodies: CD3-FITC, CD4-APC (BD, Biosciences, Schwechat, Austria), CD8-PECy7 (Beckmann Coulter, Krefeld, Germany), CD19-PerCPCy5.5 (eBioscience, Vienna, Austria) and CD56-V450 (BD, Biosciences, Austria). Subsequently, the stained cells were sorted into different subgroups of leukocytes CD3+CD4+CD8-T-cells, CD3+CD4-CD8+ T-cells and CD3-CD19+ B-cells using a MoFlo Astrios Cell Sorter from Beckmann Coulter.
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2

Profiling pSTAT3 Expression in PTCL, NOS

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Flowcytometric assay was performed on three PTCL, NOS cases, using one excised tonsil case as control. All PTCL, NOS cases were diagnosed in our laboratory using a T-cell lymphoma panel recommended by Euroflow and excluded from PTCL of T follicular helper (Tfh) cell phenotype (19 (link)) on a Cytek Spectrum Flowcytometer (NL-CLC, V16-B14). The detection of pSTAT3-Y705 was by using commercially available antibody (Catalog No: 612569) from BD Pharmingen (BD Bioscience, USA) and pSTAT3-S727 by conjugating fluorescence tag (FlexAble Coralite V405 Antibod Labeling Kit For Rabbit IgG, Cat No: KFA006) with pSTAT3-S727 (ab32143, Abcam) from Abcam (Cambridge, UK), in an 8-color panel consisting of pSTAT3-Y705-FITC, pSTAT3-S727-Corolite V405, CD3-ECD (Catlog No: A07748, Beckman Coulter), CD8-PE-Cy7 (Catlog No: 6607102, Beckman Coulter), CD10-PE-Cy5 (Catlog No: A07761, Beckman Coulter), CD19-PE-Cy5.5 (Catlog No: A66328, Beckman Coulter), CD45-cFlourV547 (Catlog No: R7-10011, Cytek), CD4-cFlourV610 (Catlog No: R7-20073, Cytek) and PD-1-BV750 (Catlog No: 329966, Biolegend).
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3

Multiparametric Flow Cytometry Analysis

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Stained cells were analyzed on an LSR cytometer (Becton Dickinson). To determine memory phenotype, CD4+ T cells were stained with anti-CD8-PEcy7 (Biolegend), -CD4-PE, -CD44-FITC and -CD62L-APC (Beckman Coulter) antibodies. For double negative population analysis, cells were stained with anti-CD4-FITC (PharMingen), -CD8-PEcy7, -B220-APC (Beckman Coulter) and -TCR-PE (PharMingen) antibodies.
BrdU was detected with an anti-BrdU-FITC antibody (Becton Dickinson) combined with -CD4-PEcy7 (eBioscience), -CD8-SPRD (Beckman Coulter), -CD44-biot (PharMingen), Av-SPRD (Beckman Coulter), -CD62L-PE (Southern) and -TCR-PE (PharMingen) antibodies. To distinguish live from dead cells, we preincubated cells with the LIVE/DEAD stain kit (Invitrogen) according to manufacturer's instructions. Only live cells were considered for analyses.
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4

Phospho-Signaling Pathway Analysis in Activated PBMCs

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Peripheral blood mononuclear cells (PBMCs) were separated on Ficoll-Paque (GE Healthcare) according to the manufacturer's instructions. PBMCs were reconstituted in a culture medium consisting of RPMI 1640 with 25 mM HEPES, L-glutamine, 100 U/ml penicillin, and 100 mg/ml streptomycin (Lonza, Basel, Switzerland) to a final concentration of 2 million cells per milliliter. After a 1-h rest at 37°C in a 5% CO2 atmosphere, the cells were stimulated on 96-well plate containing coated anti-CD3 (10 μg/ml, Exbio Praha) and free costimulatory anti-CD28/CD49d antibodies (1 μg/ml, BD Biosciences) for 5, 15, and 30 min. The cells were fixed with 4% formaldehyde for 10 min and permeabilized with ice-cold methanol for 30 min. The following fluorochrome conjugates were used for cytometric detection: phospho-Akt (Ser473)-Alexa Fluor 488, phospho-S6 (Ser235/236)-Pacific Blue (Cell Signaling Technologies), phospho-mTOR (Ser2448)-PE (eBioscience, Thermo Fisher), CD45-Pacific Orange, CD45RA-APC (Exbio), CD8-PE-Cy7 (Beckman Coulter), CD4-PerCP-Cy5.5, and CD3-APC-H7 (BD Biosciences). The samples were acquired on Canto II flow cytometer and analyzed using FlowJo software (BD Biosciences).
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5

Multicolor Flow Cytometry Panel

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Fluorescent tagged antibodies used were specific for: CD3 allophycocyanin (APC), CD3 APC-cyanine7 (Cy7), CD4 phycoerythrin (PE), IL5 PE (BD Biosciences, San Jose CA); CD8 PE-Cy7 (Beckman Coulter Miami FL); IFN-gamma APC, FoxP3 (clone PCH101) and its isotype control (eBiosciences, San Diego CA); CD25-PE (Miltenyi Biotec Inc, Auburn CA).
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6

Multiparametric Flow Cytometry Analysis

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Flow cytometric analysis was performed on the BAL samples with Becton Dickinson Biosciences FACSCanto II flow cytometer (BD, Franklin Lakes, NJ, USA). Data analysis was performed using FACSDiva software (BD). The following antibodies were used in this study: CD45 Krome Orange (Beckman Coulter, clone J33), CD3 Alexa Fluor 700 (BD, clone UCHT1), CD56 FITC (BD, clone NCAM16.2), CD19 BV421 (BD, clone HIB19), CD4 Pe-Cy5.5 (Beckman Coulter, clone 13B8.2), CD8 Pe-Cy7 (Beckman Coulter, clone SFCI21Thy2D3), CD38 APC (BD, clone HB7), HLA-DR (BD, L243), and CD25 PE (BD, clone 2A3).
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7

Multiparametric Analysis of T-cell Responses

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ICS was performed as reported earlier [23 (link)]. Cells were stimulated with individual peptides or with an equal volume of water/ 10% DMSO in the presence of anti-CD107a (BD), GolgiStop (BD) and Brefeldin A (Sigma-Aldrich). After 12 h cells were stained for CD4-APC-Cy7 (BD), CD8-PECy7 (Beckman Coulter) and CD3-BV711 (Biolegend) and with Aqua Live Dead, fixed and permeabilized in (Cytoperm/Cytofix; BD) and further stained for IFNγ-Alexa Fluor 700 (BD Biosciences), anti-TNF-Pacific Blue (Biolegend), IL-10-PE and IL-2-APC (both BD).
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8

Flow Cytometric Analysis of Multimer-Specific T Cells

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Multimers were produced by addition of streptavidin-R-phycoerythrin
conjugate (SAPE, ThermoFisher) successively to a monomer, with 30 min of
incubation while rotating overhead between each SAPE addition. Primed
CD8+ T cells were stained with Life/Dead Fixable Aqua
(ThermoFisher), CD8-PE-Cy7 (Beckmann Coulter, Brea, CA) and multimers and
measured using a FACSCanto (BD Biosciences, Franklin Lakes, NJ). Unstimulated
and unstained PBMCs and ionomycin/phorbol 12-myristate-13-acetate (PMA) were
used as controls.
Staining was only considered specific when at least a population of 0.5%
of multimer-specific T cells was detectable.
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9

Immunophenotyping of CSF Immune Cells

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Routine CSF parameters CSF was drawn as part of routine clinical work-up. Peripheral blood was taken immediately after lumbar puncture. CSF cells were counted manually in a Fuchs Rosenthal chamber. CSF glucose and lactate levels were measured by an enzymatic-amperometric method using chip-sensor technology (EKF Biosen C-Line). Albumin CSF/serum ratios and intrathecal immunoglobulin synthesis were determined by nephelometry (Siemens ProSpec®). Fluorescence-associated cell sorting (FACS) of CSF immune cells was performed as described previously. 18 The following antibodies were used for staining: cluster of differentiation (CD) 45, V450; CD3, APC-Cy7; CD4, PerCP (all BD Bioscience); CD8, PE-Cy7; CD14, FITC; CD19, ECD; CD138, PE; and CD56, APC (all Beckman Coulter). We stained CD4+ T cells (CD45 + CD3 + CD4 +), CD8 + T cells (CD45 + CD3 + CD8+), monocytes (CD45+CD14+), natural killer (NK) cells (CD45+CD56+), B cells (CD45+CD19+CD138-) and plasmablasts (CD45+CD19+CD138+). The percentage of each subpopulation was determined in relation to all CD45 positive single cells using FlowJo (version 10.1). In the discovery cohort, B cells and plasmablasts staining was missing in seven patients and monocytes staining was missing in two patients. CSF parameters are summarized in Table 2.
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