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6 protocols using its media supplement

1

Fatty Acid Pretreatment of AML12 Cells

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AML12 mouse liver cells (ATCC, CRL-2254) were grown in DMEM/F12 medium (Gibco, Gaithersburg, MD, USA) supplemented with 0.005 mg/ml insulin, 0.005 mg/ml transferrin, 5 ng/ml selenium, and 40 ng/ml dexamethasone (ITS Media Supplement, Sigma-Aldrich, St Louis, MO, USA) and 10% fetal bovine serum (FBS, Nichirei Biosciences, Tokyo, Japan). Oleic acid and palmitic acid (Sigma-Aldrich) were conjugated to bovine serum albumin at a molar ratio of 6∶1. Cells were treated with a mixture of oleic and palmitic acid for 24 hours before irradiation.
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2

Blastema Slice Culture and Treatments

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Medium-late bud stage blastemas (mesenchyme and epithelium) were removed surgically from animals, embedded in a 4% agarose gel, and sectioned at a thickness of 250 micrometers using a vibratome. Blastema slices were then cultured on transwell membrane inserts (3.0μm pore) with 6 well plates (BD Falcon) in 60% L-15 media containing 1% Gentamicin, 1% penicillin/streptomycin/amphotericin B, and 1% ITS media supplement (Sigma) in a refrigerated incubator at 19°C. Blastema slices and blastema slice/DRG co-culture were adhered to the transwell membrane with 5μL of growth factor reduced matrigel (BD). Blastema slices receiving additional treatments were cultured in media containing one of the following supplements: 5% Fetal Bovine Serum (FBS, Atlanta Biologicals); 1ng/mL, 10ng/mL, or 100ng/mL recombinant human Bone Morphogenetic Protein 2 (BMP2, Sigma); or 5nM, 50nM, 500nM of the BMP signaling inhibitor, LDN-193189 hydrochloride (Abcam). Half the volume of the culture media was changed every other day. Slices were cultured for 3, 5, or 7 days after being explanted.
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3

Isolation and Cryopreservation of Pediatric BCP-ALL Cells

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Bone marrow samples containing leukemia cells were obtained from pediatric patients with BCP-ALL. All patients were treated at Kagoshima University Hospital between 2005 and 2020. Mononuclear cells were isolated using sucrose density-gradient centrifugation (density, 1.077 g/mL; LymphoprepTM, Alere Technologies, Waltham, MA, USA) and stored at −130 °C. For each assay, leukemia cells were resuspended in RPMI-1640 (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan) supplemented with 20% fetal bovine serum (FBS), 5 μg of insulin per mL, 5 μg of transferrin per mL, and 5 ng of sodium selenite per mL (ITS media supplement; Sigma-Aldrich, St. Louis, MO, USA) [14 (link)]. Leukemia cells were not isolated and purified from bone marrow samples before being used for each assay. This study was approved by the ethics committee of the Kagoshima University Graduate School of Medical and Dental Sciences (approval number: 170242) and was conducted in accordance with the principles of the Declaration of Helsinki.
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4

Isolation of Cardiomyocytes from MDX Rat Hearts

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Additional four male DMDmdx rats at the age of 9 months were anesthetized using isoflurane (2%, inhalation) and killed by cervical dislocation. Cardiomyocytes were isolated from the ventricles of their hearts using a Langendorff setup according to the myocyte isolation procedure described in detail in our previous work (Koenig et al., 2011 (link)). In brief, hearts were rapidly excised, and a cannula was inserted into the aorta for retrograde perfusion with Ca‐free solution containing 0.17 mg/mL Liberase TH (Roche) at 37°C for 18 min. The ventricles were then cut into pieces and incubated on a shaker at 37°C, and Ca concentration was increased to 200 μM over 1 h in five steps. Pieces of digested tissue were then triturated to liberate cardiomyocytes. After a centrifugation step, the cells were resuspended in Minimum Essential Medium (MEM) alpha (Gibco), containing ITS media supplement (Sigma) diluted 1:100, 4 mM l‐glutamine, 50 u/ml penicillin, 50 mg/mL streptomycin, and 25 mM blebbistatin (Sigma). Cells were finally plated on Matrigel (Becton Dickinson)‐coated culture dishes.
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5

Mouse Chondrocyte Culture Optimization

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Mouse chondrocytes were seeded in 24-well tissue culture plates and cultured in Dulbecco’s modified Eagle medium–F-12 (WAKO) supplemented with 10% fetal bovine serum (NICHIREI), 1% ITS Media supplement (containing insulin, transferrin, and selenous acid; Sigma), and 50 μg/ml ascorbate-2-phosphate (WAKO) for the indicated times. The cells were maintained at 37 °C in a 5% CO2 incubator with medium changes every 48 h. Data were normalized to the average mRNA level at day 0 (set at 1) and are presented as means ± SEM.
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6

Podocyte Stress Response to Hyperglycemia

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Conditionally immortalized human podocytes were used for in vitro experiments [17 (link)]. Podocytes were grown in RPMI with 10% FCS and ITS media supplement (Sigma–Aldrich) in a humidified incubator, 5% CO2 at 33°C. Cells were differentiated by transferring approximately 60% confluent cells to 2% FBS media and incubated at 37°C for 2 weeks. Cells were then grown in RPMI with 5 or 25 mmol/l glucose together primed with lipopolysaccharide (LPS, 0.5 µg/ml) [18 (link)] and incubated for 18 h at 37°C followed by 4 h of treatment with MCC950 (10 µM) [11 (link)]. Cells were harvested and RNA was extracted by the TRIzol method and cDNA was synthesized for quantitative RT-PCR as described previously [12 (link)]. Results were expressed relative to the untreated normal glucose control, which was arbitrarily assigned a value of 1. In vitro experiments were repeated three times. Human probe and primer sequences used for quantitative RT-PCR are shown in Supplementary Table S2.
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