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Brainpet

Manufactured by Siemens
Sourced in Germany

The BrainPET is a positron emission tomography (PET) imaging system designed for neurological research. It provides high-resolution, 3D imaging of the brain's metabolic and functional activity. The BrainPET system is equipped with advanced detectors and reconstruction algorithms to deliver detailed, quantitative data on cerebral processes.

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8 protocols using brainpet

1

PET/MR Array Coil Design and Specifications

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The PET-compatible array coil was designed for a prototype simultaneous PET/MR scanner, composed of a 3 Tesla MRI scanner (MAGNETOM Trio, Tim system, Siemens AG, Healthcare Sector, Erlangen Germany) and a PET camera insert (BrainPET, Siemens AG, Healthcare Sector, Erlangen Germany) with magnetic field insensitive avalanche photodiodes as scintillation detectors. The standard coil provided for this scanner includes an 8-channel receive coil with a local circularly polarized birdcage transmit coil. The PET camera has inner and outer physical diameters of 35 and 60 cm respectively, with an axial PET FOV of 19.25 cm.
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2

High-Resolution MR-PET Imaging of MS

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All subjects underwent a 90-minutes 11C-PBR28 MR-PET scan on a Siemens simultaneous MR-PET system, BrainPET, a brain PET scanner operating in the bore of a 3T whole-body MR system equipped with an 8-channel head coil25 (link). The spatial resolution of the BrainPET (<3 mm in the center of the field of view) is superior to that of any other whole-body PET scanner, because of the smaller size of scintillator crystals and of the scanner diameter, which minimizes the non-colinearity effect26 (link). Within one week from MR-PET, 24 MS subjects underwent 7T MRI on a Siemens scanner using a 32-channel head coil. Three subjects were excluded due to the presence of implants not approved for 7T.
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3

PET Neuroimaging with MRI-Integrated Scanner

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The PET data were acquired on a prototype MR-compatible brain PET scanner (“BrainPET”) designed to fit inside the Magnetom Tim Trio 3T MRI scanner (Siemens Healthcare, Erlangen, Germany). Structural T1 images were acquired prior to radiotracer injection. Dynamic PET acquisition started concurrently with an injected IV bolus of 11C-PBR28, and data were stored in listmode format. T1 images were used for the generation of attenuation correction maps19 (link) as well as anatomical localization and spatial normalization of the PET data.
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4

Multimodal PET-MRI Neuroimaging Protocol

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[11C]PBR28 TSPO and [18F]MK6240 tau PET data were acquired on a hybrid PET-MRI scanner, the Siemens BrainPET, which is based on a head-only PET camera inserted into the bore of a 3T TIMTrio MRI scanner (40 (link)). A T1-weighted structural scan was also acquired using MEMPRAGE at 1 mm isotropic resolution with prospective motion correction (41 (link)). The emission data collected from 60 to 90 min post-radioligand injection for [11C]PBR28 and 70 to 90 min post-radioligand injection for [18F]MK6240 were divided into 5-min frames, reconstructed to standardized uptake value (SUV) images using an MRI-based attenuation map (described in SI Appendix), realigned (42 (link)) and averaged. The SUV image was then linearly registered to the participant’s T1-weighted MEMPRAGE scan using FreeSurfer’s spmregister [version 5.3, the version that is most accurate for registering PET to MRI data (43 (link))], skull-stripped, and normalized by a pseudo-reference region ([11C]PBR28: whole brain without ventricles (43 (link)), [18F]MK6240: isthmus cingulate cortex (44 (link))) to account for individual differences in global signal (SUVR). Individuals with a TSPO genotype that confers low-affinity binding for [11C]PBR28 were excluded from the TSPO PET analyses (SI Appendix, Table S23).
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5

PET-MRI Simultaneous Imaging Protocol

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All participants completed a scanner training protocol that included the option to view videos demonstrating procedures associated with a simultaneous PET–MRI scan at the Athinoula A. Martinos Center for Biomedical Imaging and included a training scan onsite, following our published protocol [30 (link)]. We have previously obtained high-quality data using this training protocol in individuals with ASD [15 (link)]. Participants were scanned using the Siemens BrainPET, a head-only PET camera inserted inside a 3 Tesla TIM Trio MR scanner and a head-only 8-channel receive MR radiofrequency coil. A multi-echo magnetization prepared rapid acquisition gradient echo (MEMPRAGE) T1-weighted structural scan with volumetric navigator-based prospective motion correction [31 (link)] was acquired (TR = 2530 ms, TE[1–4] = 1.66 ms, 3.53 ms, 5.4 ms, 7.27 ms, FOV = 280 mm, flip angle = 7 deg, voxel size = 1 mm isotropic). [11C]PBR28 PET was synthesized onsite by the Martinos Center radiopharmacy using methodology described previously [15 (link)]. A licensed nuclear medicine technologist administered ~15 mCi of [11C]PBR28 to participants as a slow bolus injection through an intravenous catheter in an arm or hand vein outside of the scanner (see Table 1).
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6

Dynamic FET PET Scanning Protocol

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The amino acid FET was produced and applied, as described previously [33 (link),34 (link)]. All patients underwent a dynamic FET PET scan from 0 to 50 min post-injection of 3 MBq of FET per kg body weight on a high-resolution 3 T hybrid PET/MR scanner (BrainPET, Siemens Medical Systems, Inc., Erlangen, Germany) [35 (link)]. Image data were corrected for random and scatter coincidences, as well as dead time and isotope decay, before ordinary Poisson ordered subset expectation maximization (OSEM) reconstruction using software provided by the manufacturer (2 subsets, 32 iterations). The reconstructed dynamic dataset consisted of 16 time frames (5 × 1 min, 5 × 3 min, 6 × 5 min). Since the hybrid PET/MR scanner did not provide a transmission source, attenuation correction was performed by a template-based MRI approach [36 (link)].
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7

TSPO PET Imaging in MS Patients

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Patients and 14 controls matched for TSPO affinity underwent 90-minute 11C-PBR28 MR-PET imaging on a Siemens integrated 3T MR-PET system (BrainPET), with a spatial resolution of ~2.8 mm in the center of the field of view16 (link). PET data were acquired after receiving an intravenous bolus injection of 11C-PBR28 produced in-house (mean±SD administrated dose 11.5±0.7mCi in MS versus 11.7±0.5mCi in controls, p= 0.1 by unpaired t-test), as previously described7 (link). A structural 3D-magnetization-prepared rapid scan with multiple gradient-echoes (MEMPR) images (voxel size=1mm isotropic)17 (link) was acquired simultaneously to PET data for cortical surface reconstruction, generation of attenuation correction maps18 , coregistration to PET and 7T data, and cortical thickness estimation.
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8

Standardized 18F-FET PET Protocol

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The amino acid 18 F-FET was synthetized and applied as described previously (26) . All patients underwent a dynamic PET scan from 0 to 50 min after injection of 3 MBq of 18 F-FET per kilogram of body weight. The interval between MRI and 18 F-FET PET ranged from 0 to 77 d (median, 12 d). One hundred two patients were measured on a stand-alone PET scanner (ECAT EXACT HR1; Siemens Healthcare) in 3-dimensional mode, and 25 patients were measured on a high-resolution 3-T hybrid PET/MR scanner (BrainPET; Siemens Healthcare) (22, 25) . Because of the reconstruction parameters and postprocessing steps, the different scanner types did not affect the quantitative 18 F-FET PET parameters (27) .
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