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Faststart universal sybr green master mix

Manufactured by Roche
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FastStart Universal SYBR Green Master Mix is a ready-to-use solution for real-time PCR amplification and detection using SYBR Green I as the fluorescent dye. It contains all the necessary components for efficient and sensitive real-time PCR, including a FastStart Taq DNA polymerase, reaction buffer, dNTPs, and SYBR Green I.

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672 protocols using faststart universal sybr green master mix

1

Quantitative Analysis of HBV DNA and RNA

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HBV core DNA were obtained as described [30] (link). HBV genome DNA in mouse serum and liver were extracted by using Biospin Virus DNA Extraction Kit and Biospin Tissue Genomic DNA Extraction Kit, respectively. Absolute real-time PCR were quantified by FastStart Universal SYBR Green Master Mix (Roche) (Bio-Rad, CFX Connect Real-time System), the efficiency was 95–105%, r2 > 99%. (the LOD = 40, LOQ = 1.0 × 102)
Total RNA both cells and tissue were extracted using TRNzol Reagent (Invitrogen) according to the manufacturer's instructions. First-strand cDNA was synthesized from 1μg of RNA using the iScriptTM cDNA Synthesis kit (Bio-Rad). Relative RNA expression levels were quantified by FastStart Universal SYBR Green Master Mix (Roche) and β-actin mRNA was used as an internal control. Values were analyzed using the 2-△△Ct method. (QuantStudio 6 Flex, appliedbiosystems).
The primer sequences of the experimental primers are listed in Supplementary Table.
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2

RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted using TRIzol reagent (Invitrogen) and treated with TURBO DNase (Ambion) according to the manufacturers’ instructions. For cDNA synthesis, 5 mg of total RNA was reverse-transcribed using SuperScript III reverse transcriptase and oligo(dT) primer (Invitrogen). cDNA was treated with RNase H (Invitrogen) at 37 °C for 20 min and then diluted 10-fold with H2O. For each 15-µL qPCR reaction, 1 µL of diluted cDNA was used. qRT-PCR analyses were run on an Applied Biosystems 7500 Fast Real-Time PCR System using Roche FastStart Universal SYBR Green Master Mix. The qRT-PCR primers are listed in SI Appendix, Table S8. Ct values were normalized against ACT2 (At3g18780) mRNA or UBC (At5g25760) mRNA. The abundance of mRNAs was expressed as relative to controls, with the control value set to 1. The error bars represent the SD of 4 biological replicates.
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3

Quantifying Lentiviral Transduction Efficiency

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Primers for the WPRE (Woodchuck Hepatitis Virus Response Element) region (forward 5′-TCATGCTATTGCTTCCCGTA-3′ and reverse 5′-CCAAGGAAAGGACGATGAT-3′) were used for lentivirus quantification. All oligo primers were synthesized by Genomics BioSci and Tech (Taipei, Taiwan). A LightCycler thermocycler (Roche Molecular Biochemicals, Mannheim, Germany) was used for qPCR analysis. One microliter of sample and master mix (Roche FastStart Universal SYBR Green Master Mix, Roche Applied Science, Mannheim, Germany) was first denatured for 10 min at 95 °C and then subjected to 40 cycles (denaturation at 95 °C for 5 s; annealing at 60 °C for 5 s; and elongation at 72 °C for 10 s) with detection of fluorescence intensity. All the PCR samples underwent a melting curve analysis to detect non-specific PCR products. Luciferase gene expression from the qPCR analysis was normalized to GUS (β-glucuronidase) expression as an indicator of DNA input using the built-in Roche LightCycler Software, version 4 (Roche Molecular Biochemicals, Mannheim, German).
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4

RNA Extraction and qRT-PCR Analysis

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The total RNA of the liver, adipose tissues (the WAT, the BAT, and the BeAT), and the small intestine (the duodenum, the jejunum, and the ileum) tissues were extracted using the TRIzol reagent (Takara, Japan) according to the instructions of the manufacturer. Reverse transcription was performed, and qRT-PCR was carried out on a 7,500 Real-Time PCR System (Applied Biosystems, Carlsbad, CA, United States), using the Roche FastStart Universal SYBR Green Master Mix (Roche Molecular Systems, Basel, Switzerland). β-Actin was chosen as the internal control and analyzed using the 2−ΔΔCT method (primer sequences are provided in Supplementary Table S3).
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5

Hepatocyte RNA Extraction and qRT-PCR

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Total RNAs for primary hepatocytes were extracted using the Trizol reagent (Invitrogen Life Technologies, Carlsbad, CA). Reverse transcription was performed, and qRT-PCR was done on a 7500 Real-Time PCR System (Applied Biosystems, Carlsbad, CA), using the Roche FastStart Universal SYBR Green Master Mix (Roche Molecular Systems, Basel, Switzerland) (Primer sequences in Additional file 1: Table S1). GAPDH was chosen as the internal control, and the relative quantitative ΔCt method was used for differential expression analysis.
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6

Quantitative real-time PCR analysis

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RNA was isolated as described[31 (link)]. cDNA was synthesized with iScript reagents (Bio-Rad) according to the manufacturer’s instructions. Quantitative real-time PCR was performed on a CFX Connect (Bio-Rad) with Roche FastStart Universal SYBR Green mastermix (Roche) and analyzed as described[31 (link)]. Axin2 primer sequences were 5′-GGCTGCGCTTTGATAAGGTC and 5′-TGTGAGCCTCCTCTCTTTTACAG.
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7

Quantitative RT-PCR Analysis of Rat Myocardial Gene Expression

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Total RNA was extracted from rat myocardial tissues by using a high-purity total RNA rapid extraction kit (BioTeke Corporation, Beijing). According to the manufacturer's (BioTeke Corporation, Beijing) instructions, total RNA was reverse transcribed into cDNA for qPCR using the BioTeke Super RT Kit. Roche FastStart Universal SYBR Green Master Mix (Rox) was used for qRT-PCR through the first-step system. The mRNA level of each gene was normalized to the mRNA level of β-actin. The PCR conditions were as follows: initial activation at 50°C for 2 minutes and activation at 95°C for 10 minutes, followed by denaturation at 95°C for 15 s, and annealing and extension at 60°C for 1 minute for 40 cycles. The primers used for real-time PCR are listed in Table 1.
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8

Quantifying Oocyte Transcripts via qRT-PCR

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Total RNA from 60 MII oocytes was extracted by the RNeasy Mini Kit (Qiagen, Germany), combined with the RNase-free DNase (Qiagen) treatment to remove the genomic DNA. First strand cDNA was synthesized in a 20 μl reaction volume using the ABI kit (Life technologies). Primers were designed by the Primer-blast and shown in Supplementary Table S3. 10 µl PCR reaction volume, including 1 µl cDNA template, primers and Roche Fast Start Universal SYBR green master mix (Roche Molecular Systems), was used to quantify transcripts on a 7500 real-time PCR detection system (Applied Biosystems, Carlsbad, CA, USA). PCR parameters were set up as follows: 95 °C for 10 min, followed by 40 cycles at 95 °C for 15 sec and 60 °C for 1 min. Each sample was tested in triplicate and Ywhag was used as the reference gene. Relative abundance of transcripts was calculated using the comparative Ct (2−ΔΔCt) method.
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9

Quantification of RNA Expression in C2C12 Cells

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Total RNA from C2C12 cells was isolated using Trizol reagent (Invitrogen). Following reverse transcription, qRT-PCR was conducted using a 7500 Real-Time PCR System (Applied Biosystems, Carlsbad, CA, USA) and employing a Roche FastStart Universal SYBR Green Master Mix (Roche Molecular Systems; primer sequences are detailed in Table 1). Additionally, β-actin served as the internal control, and differential expression analysis was performed using the relative quantitative ΔCt method.
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10

Transcriptome Analysis of DMSO-Treated Oocytes

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Denuded oocytes were washed twice with PBS (without Ca2+ and Mg2+) and stored at −80°C. Total RNA was extracted from 60 MII-stage oocytes from the control group, 60 MII oocytes from 3% DMSO treated (44h) group and 60 non-MII oocytes from 3% DMSO treated (44h) group (n = 3 replicates for each group), respectively, using RNeasy Mini Kit (Qiagen, USA) according to the manufacture's instructions. RNase-free DNase was added to remove genomic DNA. Total RNA from each sample was synthesized into cDNA in a 20μl final volume of reverse transcription system using the ABI kit following the instructions (Life Technologies). Primers were designed by primer-blast, as shown in S1 Table. Quantitative PCR was conducted in a 10μl reaction volume including 1μl cDNA template, primers and Roche FastStart Universal SYBR green master mix (Roche Molecular Systems) using a 7500 real-time PCR detection system (Applied Biosystems, Carlsbad, CA, USA). Thermal cycling parameters were setup as following: 95°C for 10min, followed by 40 cycles at 95°C for 15sec and 60°C for 1min. Transcripts were quantified in triplicates for each sample, and Ywhag was used as the reference gene. Relative abundance was calculated using the comparative Ct (2−ΔΔCt) method [34 (link)].
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