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120 protocols using cto 20a

1

Quantification of Organic and Inorganic Ions in GCPs

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The GCPs (3 × 106 cells) were suspended in 0.4 M mannitol, 10 mM KCl, 0.5 mM CaCl2, 0.5 mM MgCl2 and 5 mM MES-Tris buffer (pH 6.0) and illuminated with white light (80 μmol m-2 s-1 for 1 h) as described elsewhere [22 (link)] before isolation of the ions. The GCPs were ground into a fine powder, suspended in distilled water and boiled for 5 min. The suspensions were applied to Microcon YM-10 centrifugal filters (Millipore), and the organic/inorganic ions were measured in the filtrate.
The measurement of organic and inorganic ions was performed on an HPLC (Prominence, Shimadzu). The chromatographic system consisted of a Shimadzu Model system controller (SLC-10AVP), conductivity detector (CDD-10ADVP), and column oven (CTO-20A). K- and Na+ were separated using a LC-10ADVP pump, a column Shim-pack IC-C4 (150 mm × 4.6 mm) and a guard column Shim-pack IC-GC4 (10 mm × 4.6 mm) with a mobile phase (3.2 mM Bis-Tris, 8 mM p-hydroxybenzoic acid, 50 mM Boric acid) and a flow rate of 1.0 ml min-1 at 40°C. Cl- and Malate2- were separated with a LC-20AD pump, a column Shim-pack IC-A3 (150 mm × 4.6 mm) and guard column Shim-pack IC-GA3 (10 mm × 4.6 mm) with a mobile phase (3/4 dilution of 3.2 mM Bis-Tris, 8 mM p-hydroxybenzoic acid, 50 mM boric acid) and a flow rate of 1.2 ml min-1 at 40°C. Statistical analyses were performed using the Student's t test.
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2

HPLC Analysis of Organic Compounds

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High-performance liquid chromatograph system–Shimadzu LC-20 Nexera XR, solvent supply system—LC-20AD, degasser—DGU-20A5R, autosampler—SIL-20A, detector—SPD-M20A (Diode array detector), column thermostat—CTO-20A from (Shimadzu Europa GmbH, Duisburg, Germany); column—ZORBAX Eclipse Plus, C18, 150 × 4.6 mm, 3.5 µm, from Agilent (Santa Clara, CA, USA).
The mobile phase, consisting of a mixture of water phase (containing 67 mmol·L−1 potassium dihydrogen phosphate) and acetonitrile in ratio 75:25 (v/v, each liter of mobile phase containing 1.7 g tetramethylammonium sulfate) was delivered isocratically at a flow rate of 1.0 mL·min−1. Following its preparation, the mobile phase was filtered under vacuum through a 0.45 μm membrane filter and ultrasonically degassed prior to use. The chromatographic separation was performed on a ZORBAX Eclipse Plus, C18, 150 × 4.6 mm, 3.5 µm, from Agilent (Santa Clara, CA, USA). The column temperature was maintained constantly at 40 °C using a thermostatically controlled column oven. UV-Vis spectrophotometric detection was performed at 237 nm wavelength. The chromatographic running time for each analysis was 5.0 min.
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3

Quantification of Organic Acids by HPLC

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Quantification of organic acids by Aminex HPX-87H column (300 × 7.8 mm, Bio-Rad, Hercules, CA, USA) was performed as described previously [34 ] with some modifications. The mobile phase was 3 mM sulfuric acid aqueous solution. Sample (20 µL) was separated on a column set at 42 °C with a flow rate of 0.6 mL/min; and the absorbance at 215 nm was monitored by an SPD-M20A detector (Shimadzu, Japan). The HPLC system consisted of two pumps (LC-20 AT, Shimadzu, Kyoto, Japan), a degasser (DGU-20A, Shimadzu), an autosampler (SIL-20 A, Shimadzu) and a column oven (CTO-20A, Shimadzu). Chromatograms were evaluated with the Clarity software package (LabSolutions, Shimadzu). This method was termed as HPLC method 1.
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4

HPLC Analysis of Compounds

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The HPLC analysis was conducted with a Shimadzu LC-20A Prominence Series system (Shimadzu Corporation, Kyoto, Japan) equipped with a quaternary pump (LC-20AD), vacuum degasser (DGU-20A3R), autosampler (SIL-20A), column oven (CTO-20A), and photodiode-array detector (SPD-M20A). The chromatographic data were interpreted using LabSolutions Multi-PDA software. Chromatographic separation was performed on a YMC Triart C18 column (4.6 × 250 mm i.d., 5 μm). The column oven was maintained at 40°C, the detection was conducted at λ = 207 nm, and online UV absorption spectra were recorded in the range of 190 to 400 nm. The gradient elution was performed under the following conditions: initial mobile phase, acetonitrile/0.1% trifluoroacetic acid in water = 15 : 75 (v/v), 0∼15 min; 15 : 75 to 35 : 65 (v/v), 0∼10 min; 35 : 75 to 50 : 50 (v/v), 10∼20 min; 50 : 50 to 100 : 0 (v/v), 20∼25 min; and 100 : 0 (v/v), 25∼30 min. The flow rate was 1.0 mL/min, and the injection volume was 5 μL.
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5

Synthesis of Alkyl Di(MePEG-Lactate) Phosphates

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Four kinds of alkyl di(MePEG-lactate) phosphates were obtained from MePEG-lactate and monoalkoxy phosphoryl chlorides. MePEG-lactate was distilled under reduced pressure at 120˚C for 3 h before use. A typical synthetic procedure is described below: Two equivalents of MePEGlactate were added to 2 g of monoalkoxy phosphoryl chloride and reacted with 1.5 equivalents of triethylamine, as a catalyst, at 70˚C for 1 h (Figure 3). In this reaction, salt was formed from HCl produced and triethylamine. It was removed using a solvent extraction in the same manner as described above. 1H and 31P NMR spectroscopy were used to determine the structure of the compounds. The molecular weights of alkyl di(MePEG-lactate) phosphates were determined using gel permeation chromatography (GPC, SIL-20A, RID-10A, LC-20AD, CTO-20A, DGU-20A3, Shimadzu Corp., Kyoto, Japan) with columns (GPC KF-802.5 and GPC KF-804L, Showa Denko K. K., Tokyo, Japan). THF was used as a mobile phase. GPC measurements were carried out at 40˚C (flow rate: 0.5 ml/min), and 50 μl of sample solution were applied. Poly(ethylene glycol) of various molecular weights (400-20,000) was used as a standard substance, and the molecular weights of alkyl di(MePEG-lactate) phosphates were determined from a calibration curve.
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6

Ammonia Extraction from Chicken Manure

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The solid product was dried
and weighed using an electric balance. The liquid product was analyzed
using ion chromatography to determine the ammonia concentration. The
ion chromatography apparatus was the product of Shimadzu Co., Ltd.,
Japan, and comprised a high-pressure pump LC-20AD, a column oven CTO-20A,
and an electric conductivity detector CDD-10Avp. A Shim-pack IC-C4
column was used, and 2.5 mmol/dm3 oxalic acid solution
was used as the eluent with a flow rate of 1.0 cm3/min.
The liquid phase included other nitrogen-containing compounds.
The amount of nitrogen in the liquid product was determined by the
Kjeldahl method using ion chromatography instead of titration to quantify
the recovered ammonia.
The nitrogen yield of ammonia and that
of liquid-phase nitrogen
other than ammonia was defined as the ratio of the molar amount of
nitrogen in these compounds to the molar amount of nitrogen in feedstock
chicken manure, which was the sum of nitrogen in the solid phase and
nitrogen in ammonia. The ratio of the amount of nitrogen in the original
ammonia to total nitrogen in the feedstock was 0.270 mol-N/mol-N.
This value was considered to be the initial nitrogen yield of ammonia.
Hydrothermal treatment increased this value shown in the following
sections by the decomposition of nitrogen in the solid.
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7

Purification of Cyanidin-3-Glucoside by HPLC

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Preparative HPLC was performed using a Shimadzu LabSolutions system (Shimadzu, Kyoto, Japan), an SPD-M20A photodiode array detector, a CTO-20A column oven, a CBM-20A communications bus module, and an LC-20AD binary pump. HPLC separation was performed with a gradient system using 0.1% (v/v) trifluoroacetic acid in water as mobile phase A and 0.1% (v/v), trifluoroacetic acid in methanol as mobile phase B, a Tsk-gel ODS-80Ts (20 mm × 250 mm, 5 μm; #0018409; Tosoh Co., Ltd., Tokyo, Japan), and a flow rate of 8.0 ml/min. The injection volume was 500 μL and the temperature of the column oven was maintained at 40°C. C3G was separated using a linear gradient, commencing with 33% B over 0–22.5 min; then followed by 90% B over 22.5–35 min, and 33% B over 35–50 min, with elution between 16 and 22 min. The eluate was collected and evaporated to obtain purified-C3G. The gradient from 35 min onwards was used to re-equilibrate the system between samples. The absorbance of C3G was monitored at 280 nm and 513 nm using a UV detector. The HPLC chromatogram of purified-C3G was described in Supplementary Figure S7.
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8

GPC Analysis of PMMA Polymers

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As measuring instruments, the LC-20AD, SIL-20AHT, RID-10A, and CTO-20A from Shimadzu were used as a pump, an autosampler, a detector, and a thermostat, respectively. PROTEIN KW-804 manufactured by Shodex was used by connecting five in series. The eluent was five mM LiBr dissolving in DMF. The flow rate of the eluent at the time of measurement was 1.0 ml/min, and the oven temperature was 40°C. The poly (methyl methacrylate) standards (PMMA, Mn = 2k, 4k, 8k, 10k, 20k, 50k, 100k, 150k, 2480k) were purchased from Sigma-Aldrich. In measuring the target polymers, the samples were dissolved in the DMF/LiBr mixed solvent, and the solution’s concentration would be 2 wt%.
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9

HPLC-MS Analysis of Analytes

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The HPLC analysis was performed using a Shimadzu LC-20A (Shimadzu Co., Kyoto, Japan), which consisted of a pump (LC-20AT), on-line degasser (DGU-20A3), column oven (CTO-20A), autosampler (SIL-20 AC), and PDA detector (SPD-M20A). The data were processed with LCsolution software (Version 1.24, Shimadzu, Kyoto, Japan). The analytes were separated on a Phenomenex Gemini C18 column (250×4.6 mm, 5 μm, Torrance, CA, USA) maintained at 40°C. The gradient elution of mobile phases A (1.0% v/v aqueous acetic acid) and B (acetonitrile with 1.0% v/v acetic acid) was conducted as follows: 15-20% B for 0–10 min, 20-70% B for 10–30 min, 70-100% B for 30–40 min, 100% B for 40–45 min, and 100-15% B for 45–50 min. The flow rate was 1.0 mL/min and injection volume was 10 μL. The PDA detector was monitored at 203 nm, 254 nm, and 280 nm.
The mass spectrometer was operated using a Waters triple quadruple mass spectrometer equipped with electrospray ionization (ESI) source. The MS conditions were as follows: capillary voltage, 3.3 kV; extractor voltage, 3 V; RF lens voltage, 0.3 V; source temperature, 120°C; desolvation temperature, 300°C; desolvation gas, 600 L/h; cone gas, 50 L/h; collision gas, 0.14 mL/min. Data acquisition was processed by Waters MassLynx software (version 4.1, Milford, MA, USA).
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10

Urinary Pharmacokinetic Analysis by HPLC

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Urinary samples for pharmacokinetic analysis were detected using an LC-20 high-performance liquid chromatography (HPLC) system (Shimadzu, Kyoto, Japan), consisting of a system controller (CBM-20A), pumps (LC-20AD XR), degasser (DGU-20A3), autosampler (SIL-20 AC XR), and column oven (CTO-20A) coupled with a UV detector (SPD-M20A). A reverse-phase C18 column (Purospher STAR, 100 mm × 2.1 mm, 2 μm, Merck, Darmstadt, Germany) was equipped, and the separation of the analytes was performed using .1% formic acid aqueous solution–MeOH (43:57, v/v) at a flow rate of .2 mL/min, as well as a total run time of 15 min. The UV wavelength was 254 nm for detection. Method validation of bioanalytical assays for urinary pharmacokinetic experiments was based on the bioanalysis guidelines of the US FDA (Meesters and Voswinkel, 2018 (link)).
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