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77 protocols using architect i1000sr

1

Comprehensive Infectious Disease Screening

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Serum hepatitis B surface antigen (HBsAg) and serum HIV antigen and antibodies (HIVAg/Ab) were determined using chemiluminescence microparticle immunoassays (CMIA) (ARCHITECT® i1000SR or i2000SR HIV Ag/Ab Combo and ARCHITECT® i1000SR or i2000SR HBsAg qualitative respectively, Abbot, Chicago, Illinois, USA). HIVAg/Ab positive findings were confirmed with an immunoblot assay in the reference laboratory (TYKSLAB, Turku, Finland or HUSLAB, Helsinki, Finland). Serum Treponema pallidum antibodies (anti-Trpa) were determined using CMIA (IMMULITE® 2000XPi, Siemens, Munchen, Germany or ARCHITECT® i2000SR, Abbot). The blood lymphocyte reactivity to Mycobacterium TB antigens was determined using an Interferon Gamma Release Assay (IGRA) (QuantiFERON-TB Gold Plus, Qiagen, Hilden, Germany). Positive cases were referred to a doctor’s consultation.
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2

Immune Biomarkers and Micronutrients in COVID-19

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Blood immunity parameters included levels of CD+4, CD8+T, and CD3+T cells and specific IgM and IgG antibodies against influenza and SARS-CoV-2. Blood levels of T lymphocyte subsets were measured by flow cytometry (Cytomics FC500, Beckman Coulter Life Sciences, L’Hospitalet de Llobregat, Barcelona, Spain) and results were expressed as cells/µL. Specific IgM and IgG antibodies to SARS-CoV-2 spike and nucleocapsid proteins were measured by automated chemiluminescent immunoassay (Architect i 1000 SR, Abbott Diagnostics, Madrid, Spain) and expressed as AU/mL. Influenza A virus IgG antibodies against influenza A antigens A/Victoria/3/75 (ATCC VR-822) strain and Influenza B virus IgG antibodies against influenza B antigens, B/Hong Kong/5/72 (ATCC VR-791) strain, were determined by electro-chemiluminescence (Virclia® IgG monotest, Vircell, S.L., Granada, Spain) and expressed as avidity index (AI). Serum levels of selenium and zinc were determined using inductively coupled plasma mass spectrometry (IC-PMS) (7900 Agilent Technologies, Barcelona, Spain) and results were expressed as µg/dL. All assays were performed according to the manufacturer’s instructions.
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3

Quantifying HE4 and IL-6 in CFBE cells

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Chemiluminescent microparticle immunoassay (Architect-i1000SR®, Abbott Diagnostics, Wiesbaden, Germany) was used to analyze protein levels of HE4 in the supernatants obtained from CFBE cell cultures following different research treatments as indicated above. In addition, HE4 plasma concentrations were measured before treatment and after LUM/IVA treatment with the same immunoassay that we used on our previous cohorts (Nagy et al., 2019 (link)). IL-6 levels were measured by electro-chemiluminescent immunoassay on a Cobas e 411 instrument (Roche Diagnostics). These measurements were performed in an analyst-blinded mode in all studied cases in order to avoid any potential operator-related bias.
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4

Biomarker Measurements in ARISTOTLE and RE-LY

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Blood samples were collected in both the ARISTOTLE and RE-LY studies in EDTA tubes at randomization and immediately centrifuged, frozen in aliquots, and stored at −70 °C until analysed centrally at the UCR Laboratory, Uppsala, Sweden. Cardiac troponin-I (cTnI-hs) levels were determined with high-sensitivity immunoassays on the ARCHITECT i1000SR (Abbott Diagnostics), Troponin-T (cTnT-hs) and N-terminal pro B-type natriuretic peptide (NT-proBNP) with high-sensitivity immunoassays on the Cobas® Analytics e601 (Roche Diagnostics), growth differentiation factor-15 (GDF-15) with the Elecsys GDF-15 pre-commercial assay kit P03 with the same standardization as the recently introduced routine reagent (ROCHE Diagnostics). All analyses were performed according to the instructions of the manufacturer and have been detailed previously.13 (link),23–29 (link) Plasma creatinine (Roche Modular) and haemoglobin (Beckman Coulter) measurements were performed by central laboratories. Estimated glomerular filtration rate was calculated by the Chronic Kidney Disease Epidemiology Collaboration (CKD-EPI) equation.
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5

Cardiac Troponin I Measurement Protocol

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Hs-TnI was determined from blood samples collected at admission, after 1 and 3 hours. The sensitivity of the hs-TnI immunoassay (Abbott Diagnostics, USA, ARCHITECT i1000SR) had a limit of detection at 1.9 ng/L (range 0–50,000 ng/L) and a 10 percent coefficient of variation at a concentration of 5.2 ng/L. The assay-specific 99th percentile was described at 27 ng/L in the general population.[19 (link)]
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6

External Validation of Biomarkers for Acute Chest Pain

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The clinical/proteomic panel was externally validated in a cohort of patients enrolled in the BACC (Biomarkers in Acute Cardiac Care) study (ClinicalTrials.Gov NCT02355457).12 The BACC study is a prospective observational study that enrolled patients presenting with acute chest pain in the ED of the University Medical Center Hamburg‐Eppendorf in Germany beginning in July 19, 2013.12 Informed consent was provided by the participants. For the purpose of this analysis, the first 303 patients who underwent a coronary angiogram for evaluation of their symptoms were included in this cohort. After excluding those with ST‐segment–elevation MI (n=46) and those with missing protein concentrations (n=16), we identified 241 patients for inclusion in our analysis (Figure S1). Enrollees in the BACC study had blood drawn immediately on presentation to the ED with their symptoms as described.12 In the BACC study validation cohort, the ARCHITECT i1000SR (Abbott Diagnostics) hs‐cTnI was used. The limit of detection for the assay is 1.2 ng/L and the 99th percentile is 34 ng/L for men and 16 ng/L for women.
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7

Biomarker Quantification in Cardiovascular Cohort

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Within the recruiting sites, blood samples were obtained before angiography and application of heparin in a fasting state under standardized conditions and stored at −80°C until analysis.
Plasma levels of suPAR were determined with the suPARnostic standard enzyme‐linked immunosorbent assay (ViroGates, Birkerød, Denmark). The intra‐assay variation was 2.75%, and the interassay variation 9.17%. High‐sensitivity‐assayed troponin I (hs‐TnI) was measured using the Architect immunoassay (ARCHITECT i1000SR, Abbott Diagnostics, Chicago, IL). The intra‐assay variation was 6.68%, and the interassay variation 4.26%. CRP (C‐reactive protein) was determined by a highly sensitive, latex particle‐enhanced immunoassay (detection range, 0–20 mg/L; Roche Diagnostics, Mannheim, Germany). The measurement of NT‐proBNP (N‐terminal pro‐B‐type natriuretic peptide) was performed by electrochemiluminescence sandwich immunoassay (Roche Diagnostics, Mannheim, Germany). Serum creatinine was determined by standardized routine laboratory method. The Chronic Kidney Disease Epidemiology Collaboration equation was applied to calculate the eGFR.15 All biomarkers were measured in a blinded fashion.
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8

Biomarker Measurement in Cardiovascular Study

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At randomization and at 2 months, blood samples were collected in vacutainer tubes containing EDTA and were centrifuged immediately. Plasma was frozen in aliquots and stored at −70°C until analyzed centrally at the Uppsala Clinical Research Center. The cTnI concentration was determined with high‐sensitivity sandwich immunoassays on the ARCHITECT i1000SR (Abbott Diagnostics). The dynamic range is 0.7 to 50 000 ng/L, limit of detection in the Uppsala Clinical Research Center laboratory 1.3 ng/L, and the 99th percentile upper reference limit for healthy persons 23 ng/L.11 The coefficient of variation (CV) for this cTnI assay is 10% at 3.3 with a local CV of 7% at 21 ng/L. The cTnT concentration was determined with high‐sensitivity sandwich immunoassays on the Cobas Analytics e601 Immunoanalyzers (Roche Diagnostics). The measuring range is 3 to 10 000 ng/L, limit of detection 5 ng/L, and the 99th percentile upper reference limit for healthy persons 14 ng/L.12 The CV is 10% at 13 ng/L with a local CV of 3% at 27 ng/L. NT‐proBNP concentration was determined on the Cobas Analytics e601 Immunoanalyzers (Roche Diagnostics). The limit of detection is 5 ng/L. The analytical range is 20 to 35 000 ng/L. The upper reference limit is 269 in men and 391 ng/L in women.13 The CV is <10% at 30 ng/L with a local CV of 3% at 27 ng/L.14
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9

Biomarker Measurement from Venous Blood

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Venous blood was drawn at randomization, before initiation of study treatment, using a 21/22‐gauge needle into vacutainer tubes containing EDTA. The blood was centrifuged within 30 minutes at 2000g for 10 minutes. The tubes were thereafter immediately frozen at −20°C or colder. Aliquots were stored at −70°C to allow for central batch analysis.
Plasma concentration of GDF‐15 was determined by Elecsys GDF‐15 precommercial assay kit P03 with the same standardization as the recently introduced routine reagent (Roche Diagnostics).9, 18 cTnI concentrations were measured on Architect i1000SR (Abbott Diagnostics) using hs assays. cTnT and NT‐proBNP were analyzed with high‐sensitivity assays on Cobas Analytics e601 and c501 Immunoanalyzer (Roche Diagnostics). These biochemical analyses were performed centrally at Uppsala Clinical Research Center laboratory (Uppsala, Sweden), according to the instructions of the manufacturer. Details about the characteristics of these assays have been reported previously.19, 20
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10

Cardiac Biomarkers in Acute Settings

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High-sensitivity cardiac troponin I was measured using the Architect immunoassay (ARCHITECT i1000SR, Abbott Diagnostics) at admission, and after 1 and 3 h. This specific assay has a limit of detection of 1.9 ng/L and a < 10% coefficient of variation at a concentration of 5.2 ng/L (27 (link)). In the general population the 99th percentile has been reported at 27 ng/L (28 (link)). Measurements were performed in part from fresh samples and in part in batches from samples that had been frozen at −80°C and never previously thawed. Copeptin measurements were performed retrospectively in batches of frozen admission samples using the BRAHMS copeptin proAVP automated immunofluorescent assay on the KRYPTOR Compact Plus system (Thermo Fisher Scientific, Hennigsdorf, Germany). This assay has a lower limit of detection of 0.9 pmol/L and a functional assay sensitivity of < 2 pmol/L. The direct measuring range was 0.9 to 500 pmol/L. For the analysis, we used a cut-off concentration of 10 pmol/L, as recommended by the ESC Study Group on Biomarkers in Cardiology of the Acute Cardiovascular Care Association (10 (link)).
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