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Em109 electron microscope

Manufactured by Zeiss
Sourced in Germany

The EM109 is an electron microscope manufactured by Zeiss. It is designed to produce high-resolution images of small-scale structures and features by using a focused beam of electrons instead of light. The EM109 is a core tool for researchers and scientists working in fields that require detailed visualization and analysis of microscopic samples.

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18 protocols using em109 electron microscope

1

Ultrastructural Analysis of Zebrafish Tissues

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Zebrafish were fixed with 2% glutaraldehyde in 0.1 M sodium cacodylate, pH 7.2-7.3 overnight at 4°C and washed three times with PBS for 10-20 min. Thereafter, tissue was osmicated with 1% OsO4 in 0.1 M cacodylate and dehydrated in increasing ethanol concentrations. Araldite infiltration and flat embedding were performed following standard procedures. Toluidine blue was used to stain semithin sections of 0.5 µm. 70-nm-thick sections were cut with an Ultracut UCT ultramicrotome (Reichert) and stained with 1% aqueous uranylic acetate and lead citrate. Samples were analyzed with a Zeiss EM 109 electron microscope (Zeiss).
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2

Negative Staining Electron Microscopy

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Samples were incubated for 10 min on glow discharged, copper grids coated with carbon-formvar (Plano GmbH, Wetzlar, Germany) and fixed in 2% formaldehyde (Car Roth, Karlsruhe, Germany) for 10 min at RT. Excess liquid was blotted off and the grids were washed twice with MQ H20 and dried completely. Prior to imaging, the grids were immersed in 4% uranyl acetate for 1 min, then washed twice in MQ H20 and dried again. Images were acquired on a Zeiss EM109 electron microscope (Carl Zeiss, Oberkochen, Germany) operating at 40 kV and equipped with a BioScan Camera Model 792 (Gatan Inc., Pleasanton, United States).
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3

Characterization of Extracellular Vesicles

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Fragaria-derived EPDENs, Citrus limon L.-derived EPDENs, and ADMSC-derived EVs were resuspended in 2% paraformaldehyde (PFA) and loaded onto formvar carbon-coated grids (Electron Microscopy Sciences, Hatfield, PA, USA). Subsequently, the EPDENs and EVs were fixed in 1% glutaraldehyde, washed, and contrasted with a solution of uranyl oxalate (pH 7) embedded in a mixture of 4% uranyl acetate and 2% methylcellulose before observation with a Zeiss-EM 109 electron microscope (Zeiss, Oberkochen, Germany). The diameter of EPDENs and EVs was measured, and the percentage of size distribution was calculated.
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4

Ultrastructural Analysis of Frontal Cortex

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Small tissue fragments from the right frontal cortex were collected during the autopsy. Small blocks (1 mm 3 ) were fixed in 2% glutaraldehyde/2% paraformaldehyde in cacodylate buffer overnight, postfixed in 1% osmium tetroxide, dehydrated, and embedded in plastic resin. Ultrathin sections obtained from selected areas were double-stained with uranyl acetate and lead citrate and examined in a Zeiss EM 109 electron microscope (Carl Zeiss Meditec, Inc) at 80 kV.
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5

Extracellular Vesicle Characterization by TEM

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SEV from human serum, HEK 293 cell culture supernatant or synovial fluid were purified and resuspended in PBS. A drop of purified EV was placed on parafilm and a formvar carbon coated nickel grid (Plano, Wetzlar, GER) was placed on top of the drop for 30–60 min. The samples were fixed with 2% paraformaldehyde (Carl Roth, Karlsruhe, GER) for 10 min and washed three times with MQ. SEV were examined using a Zeiss EM109 electron microscope.
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6

Electron Microscopy Sample Preparation

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An EM109 electron microscope (Zeiss, Oberkochen, Germany) was used to acquire ultramicroscopy micrographs. Sample preparation was performed as described earlier (Yang et al., 2010 (link)).
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7

Ultrastructural Analysis of Skin Samples

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UVB-irradiated mice were lethally anesthetized with pentobarbital (700 mg/kg) and perfused with 4% PFA in PBS. Skin samples were kept overnight in fixation solution, rinsed, and stored in PBS. After washing in 0.1 M cacodylate buffer pH 7.2 at 4 °C, the specimens were treated with 2% OsO4 for 2 h. After washing, they were stained in 1% uranyl acetate, dehydrated, and embedded in araldite resin. Ultra-thin sections (30–60 nm) were processed with a diamond knife and placed on copper grids. Transmission electron microscopy was performed using an EM109 electron microscope (Zeiss, Oberkochen, Germany).
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8

Ultrastructural Analysis of Cell Samples

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In ultrastructural analysis, samples were fixed in Karnovsky-lto solution (4% PFA, 5% glutaraldehyde, and 0.05% picric acid in cacodylates buffer with pH: 7.2–7.4) (Ito, 1968 ) during 24 h at room temperature (RT). For post-fixation we used 2% aqueous osmium tetroxide for 1 h; samples were then treated with a 1% aqueous solution of uranyl nitrate. After rapid dehydration with 30%–100% gradual acetone, tissues were embedded in epoxy resin. Sectioning was done with a diamond knife on an RMC ultramicrotome. Semithin 350 nm thick sections were stained with 1% toluidine blue (TB) for the study of apoptotic and/or necrotic features with a light microscope. Also, ultra-thin (70 nm) sections were collected on 200-mesh copper grids without a supportive substrate. Sections were counterstained with uranyl acetate and lead citrate and analyzed on a Carl Zeiss EM109 electron microscope.
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9

Ultrastructural Analysis of Murine Musculoskeletal Tissues

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The samples of back skin and myotendinous junction (Achilles tendon/soleus) from 1-year old mice were isolated and fixed in buffer (2% paraformaldehyde, 2% glutaraldehyde, and 0.1 mol/L cacodylate buffer at pH 7.35) for 24 h. After the tissue was processed according to a standard protocol and embedded in Epon-Araldite. The ultrathin Sects. (50–100 nm) were analysed via an EM109 electron microscope (Zeiss, Oberkochen, Germany).
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10

Immuno-TEM Analysis of FMRP and Cortactin

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Immuno Transmission Electron Microscopy (iTEM) was performed as reported [16 (link)] using anti-FMRP (1:5) and anti-Cortactin (1:10) antibodies. The grids were then incubated for 1 h with goat anti-rabbit IgG (1:5) conjugated with 25 nm colloidal-gold particles (British Biocell, Cardiff, United Kingdom) and with anti-mouse IgG (1:5) conjugated with 15 nm colloidal-gold particles (British Biocell, Cardiff, United Kingdom), counterstained in uranyl acetate to underline the cell morphology, and observed with EM 109 electron microscope (Zeiss, Oberkochen, Germany).
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