The largest database of trusted experimental protocols

47 protocols using uplanfln

1

Immunofluorescence Imaging of Cytoskeletal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed using 4% paraformaldehyde in PBS for 20 min at room temperature before being permeabilized with 0.2% (v/v) Triton X-100 in PBS for 5 min and blocked with PBS containing 1% BSA. Cells were then labeled with primary antibodies anti-vinculin (mouse) antibody (Sigma) (1:100) and phalloidin-TRITC (Sigma) (1:500) in blocking buffer at 4 °C at 37 °C, and washed in PBS. Fluorescent dye (DYE-Light)-conjugated secondary antibodies against goat IgG were used at a dilution of 1:500 for 1 h at 37 °C in blocking buffer. After washing in PBS the samples were mounted with HOECHST 33258 (Sigma), 1 mg/mL in PBS 1× for 5 min. Cells were viewed on a Confocal microscopy system (Olympus) equipped with a 20× (UPlan FLN, NA 0.50), 40× (UPlanFLN, NA 1.30, oil) and 60× (UPlanSApo, NA 1.35, oil) with a resolution of 1024 × 1024 pixels.
+ Open protocol
+ Expand
2

All-Optical Character Recognition Using MLD

Check if the same lab product or an alternative is used in the 5 most similar protocols
A schematic diagram of the experimental setup is given in Fig. S17. The light beam is generated through a Thorlabs OBIS 785 nm laser source. The polarised beam is directed on a Hamamatsu SLM X13138-07 (620–1100 nm). After this, two 4f systems resize the image of the handwritten letter to match the MLD dimensions and focus it on the input imaging plane. The use of a high-magnification objective (Olympus UPLANFL N, 60× 0.9 NA) in the 4f system is necessary to obtain an input image, with a size compatible with the MLD. After passing through the MLD, the signal is collected by an objective (Olympus UPLANFL N, 60× 0.9 NA), focused on the output plane and detected by a CCD camera (Basler ace acA2040-90uc, frame rate 90 Hz). In the case of the MLDs printed on the CMOS sensor, the output image is collected directly by the CMOS sensor (Sony IMX219 NoIR, frame rate 60 Hz).
+ Open protocol
+ Expand
3

Fluorescence Microscopy of pHEMA Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell imaging was carried out using fluorescence microscopy, phase contrast microscopy, and bright field microscopy. A BX 43 microscope using the IC capture software (Olympus, Hamburg, Germany) with reflection and fluorescence microscopy using different objectives (10× UPLanFLN, 20× LcACH N; Olympus, Hamburg, Germany) was used to image the pHEMA samples. For the controls, i.e., cells on 6-well plates (Sarstedt, Germany), an inverted microscope (IX81) and CellSens software (Olympus, Hamburg, Germany); objectives: 10× UPLanFLN, 20× LcACH N (Olympus, Hamburg, Germany) was used. For each position, images in reflection and fluorescence mode were recorded. The imaging was conducted in FlouroBrite medium (Gibco, Germany) to limit background fluorescence.
+ Open protocol
+ Expand
4

Microfluidic Droplet Generation for Fluorescence Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorinated oil HFE-7500 (3M) with Picosurf-1 (PS1, 2.5%, Sphere Fluidics) was used as the dispersed phase, while commercial RF was diluted to various concentrations (0–180 µM) to be the aqueous phase. Liquid flow in all the chips was driven with Harvard Apparatus 2000 syringe infusion pumps. Plastic syringes of 1 and 5 ml were used to load the ethanol solutions and the surfactant-enriched fluorous carrier, respectively. The syringes were connected to the microchips via fine bore polyethylene tubing (ID = 0.38 mm, OD = 1.09 mm, Smiths Medical International Ltd). When flow rates of 2000 µl h−1 (continuous phase, fluorinated oil and surfactant) and 250 µl h−1 (dispersed phase, being the RF solutions) were used within a flow-focusing nozzle of 80 × 75 (width × height) droplets of ≈100 µm were generated. Droplet formation was monitored through a 10× microscope objective (UPlanFLN, Olympus) and a Phantom V72 fast camera mounted on the microscope (IX71, Olympus). Fluorescence of each droplet was detected as they passed along a laser beam focused on the outlet channel after the droplet generation. A home-made LabVIEW script was used for the quantification of the fluorescence to be adjusted to a calibration curve (electronic supplementary material, figure S2).
+ Open protocol
+ Expand
5

Live Blood Microscopy Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fresh or incubated human blood obtained from 30 healthy volunteers was deposited on a glass slide and observed without fixation or staining using a BX-51 optical microscope (Olympus, Tokyo, Japan) equipped with a 100× oil immersion objective with iris (UPlanFLN, Olympus) and a dark-field condenser (Cerbe Distribution, Sherbrooke, Canada). Each specimen was observed individually at a magnification of either 1,000 or 2,000× and images were acquired with a Spot Flex color camera (Diagnostic Instruments, Sterling Heights, MI). Two aliquots were observed from each specimen or treatment (incubation time).
+ Open protocol
+ Expand
6

Optical Measurement and Fourier-Space Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
The optical measurement of the sample was executed on an inverted microscope (Olympus IX81). Emission from the LED with metasurface-integrated electrode was collected by a 100 × microscope objective (Olympus UPlanFL N, NA = 0.95) and optical images were obtained by an SCMOS image sensor (INFINITY 3, Numenera Inc.). The collected emission was directed to a spectrometer with 350 μm entrance slit width (Spectro Pro 500i, Action Research Inc.) and detected by an electron-multiplying charge-coupled device (EMCCD) (NewtonEM, ANDOR).
The Fourier-space images36 ,37 (link) were measured using the setup shown in Fig. 3a. To obtain the Fourier-space image, a convex lens was placed at the image plane of the microscope, and then an EMCCD detector was positioned at the focal plane of the lens (f). The image taken from the EMCCD is a Fourier-space image. By switching the mirror positioned in the light path, we could easily change the light path from the microscope. To convert the Fourier-space image into an optical image, we positioned another lens with the same f at the distance of 2 f from the first lens. The transmitted light was focused into another CCD device by the second lens, and the optical image was obtained in this CCD.
+ Open protocol
+ Expand
7

Xenopus Egg Extract for Spindle Assembly

Check if the same lab product or an alternative is used in the 5 most similar protocols
Xenopus egg extract was prepared and used as previously described (Maresca and Heald, 2006 (link)). TPX2 purification and experiments were described previously (Helmke and Heald, 2014 (link)); the TPX2 experiments presented here were all carried out with 200 nM of X. laevis TPX2. Xenopus embryo extract was prepared as previously described (Wilbur and Heald, 2013 (link)), and extract mixing was performed before the onset of spindle assembly. Nuf2 inhibitory antibody (McCleland et al., 2003 (link)) was added before the onset of spindle assembly and was a generous gift from Todd Stukenberg (University of Virginia). Images were taken on an Olympus BX51 epifluorescence microscope controlled by Micromanager software under 40× magnification (0.75 NA, UPlanFl N; Olympus) with TRITC (for rhodamine-labeled tubulin) and DAPI (for DNA) filters (Chroma Technology Corp.) with an Orca-ER cooled CCD camera (Hamamatsu Photonics) at 25°C. Exposure times were 50 ms for TRITC and 20 ms for DAPI, and focus was manually assessed. Vectashield was used as mounting medium.
+ Open protocol
+ Expand
8

High-Throughput Fluorescence Microscopy Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
After staining, each 96-well plate was imaged by using an Olympus IX81 epifluorescence microscope (×4 objective, N.A. of 0.13, Olympus UPlanFL N; Tokyo, Japan). The imaging area consisted of a grid of either 4 × 3 or 6 × 4 overlapping images covering 47%–54% of the total well area. Well-focused images covering the entire image area were obtained by autofocusing on each image position by using a custom script written in MatLab (Natick, MA). Each sample was imaged by using blue, red, far red, and green filter sets (Chroma ET-DAPI 49000, Semrock TxRed-4040B, Chroma ET-Cy5 49006, and Semrock FITC-3540B, corresponding to the Hoechst 33342, ALP, EDU, and Muc2 stains, respectively) and an exposure time of 150 milliseconds for all channels. The total image acquisition time for a 96-well plate using a 6 × 4 image grid for each well was 456 ± 7.5 minutes.
+ Open protocol
+ Expand
9

Immunohistochemical Analysis of AXL and MITF

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunocytochemistry, five days after seeding, cells were scraped in cold PBS, formalin-fixed, paraffin-embedded, and processed as below. For immunohistochemistry, 4 μM sections of formalin-fixed, paraffin-embedded specimens were heated at 60°C, deparaffinized in xylene, and hydrated in a series of ethanol dilutions. Epitope retrieval was by microwaving (5 min at 850w, 15 min at 150w) in 10 mM Tris-EDTA buffer pH 9.0. Slides were blocked 10 minutes in 3% BSA in TBST (Tris pH 7.6, 0.05% Tween-20). Primary antibodies were as follows: MITF, 1:100 in 3% BSA in TBST, clone D5 (Dako M3621); AXL, 1:100 in 3% BSA in TBST, clone C89E7 (CST 8661). Slides underwent 10 min peroxidase block in 3% H2O2. Secondary antibodies were: goat anti-mouse IgG-HRP (BioRad 170-6516, 1:200 in 3% BSA in TBST; Dako EnVision anti-rabbit (K4003, ready-to-use). Slides were developed with DAB+ (Dako K3468) for 10 min and counterstained 1 min with hematoxylin (Vector H-3401) prior to dehydration and mounting. Slides were imaged on an Olympus BX51 microscope with Olympus DP25 camera using Olympus WHN10X-H/22 oculars, Olympus UPlan FL N -20×/0.50 and -40×/0.50 objectives, an Olympus DP25 camera, and images acquired using Olympus DP2-TWAIN software and Adobe Photoshop 7.0. Slides were scored for intensity and distribution of AXL and MITF by a dermatopathologist blinded to clinical outcome.
+ Open protocol
+ Expand
10

Fluorescent protein characterization using femtosecond laser

Check if the same lab product or an alternative is used in the 5 most similar protocols
Femtosecond laser pulses (80 MHz repetition rate, 100 fs, up to 25 nJ per pulse) from a Ti:Sapphire oscillator (Tsunami, Spectra-Physics, Andover, MA, USA) were applied at an 8 MHz repetition rate using an acousto-optic modulator (Pulse select, APE, Berlin, Germany) and a frequency doubled in the BBO SHG crystal. Then, femtosecond pulses with a central wavelength of 490 nm were coupled with an inverted optical microscope (IX71, Olympus, Tokyo, Japan) using a dichroic mirror (DMLP505, Thorlabs, Newton, MA, USA) and successfully focused on a sample using an objective lens (40 × 0.75NA UPlanFLN, Olympus, Tokyo, Japan). The samples were prepared as droplets of the purified fluorescent proteins dissolved in buffered solution (pH 5.5–10.0), applied to a standard 24 × 24 mm cover glass (Heinz Herenz, Hamburg, Germany). The average laser power was tuned with a polarizing attenuator in the range of 0.1–10 µW. The fluorescence (>505 nm) passed back through the objective lens and laser coupling dichroic mirror was directed towards the input of an Acton SP300i monochromator with a hybrid single-photon detector on its output (HPM-100-6, Becker&Hickl, Berlin, Germany), registering the fluorescence decay kinetics in the 510–520 nm band. The fluorescence decay data were analyzed using SPCImage software (Becker&Hickl, Berlin, Germany) with the measured instrument response function (IRF).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!