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Dimethyl sulfoxide (dmso)

Manufactured by Fujifilm
Sourced in Japan, United States, Germany, Switzerland

DMSO is a versatile laboratory solvent that is commonly used in various scientific applications. It is a colorless, odorless, and polar aprotic liquid with a high boiling point. DMSO's primary function is to act as a solvent, capable of dissolving a wide range of organic and inorganic compounds, making it a valuable tool in various research and experimental settings.

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476 protocols using dimethyl sulfoxide (dmso)

1

Synthesis and Characterization of Iron Complexes

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The solvent (DMSO) and solutes (dehydrated FeCl2, dehydrated FeCl3 and LiCl) were purchased from FUJIFILM Wako corp. and used as received. The solutions contain 0.5(1 − nFe3+) mM FeCl2 and 0.5nFe3+ mM FeCl3, where is the molar ratio of Fe3+. The sum of [Fe2+] and [Fe3+] was fixed at 0.5 mM. The [Cl] value was controlled by adding small amount (0.1–0.4 vol%) of 19 M LiCl aqueous solution. We investigated DMSO solution containing 300 mM LiCl at nFe3+ = 0.5 as a prototypical solution of [FeCl4]2−/[FeCl4]. We further investigate Cl-free DMSO solution containing 0.25 mM Fe(ClO4)2·6.0H2O (FUJIFILM Wako corp.) and 0.25 mM Fe(ClO4)3·7.1H2O (FUJIFILM Wako corp.) as a prototypical solution of [FeL6]2+/[FeL6]3+.
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2

Cryopreservation Cocktail Optimization

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After brief centrifugation (300×g for 3 min), cell clumps consisting of some 25,000 cells were resuspended in 0.5 mL of ice-cold freezing cocktail (A, B, C, D, or E, defined below). Cocktails were prepared from CP-1™ basal freezing medium [total volume 68 mL of saline containing 12 g of hydroxyethyl starch (HES) and 10 mL of DMSO, Kyokuto Pharmaceutical Industrial]. Final concentrations of cocktail constituents of A–E were as follows:
A, [6% (w/v) HES, 5% (v/v) DMSO, 4% (w/v) bovine serum albumin (BSA; Sigma), and 50% (v/v) D-MEM/F12 in saline]
B, [6% (w/v) HES, 5% (v/v) DMSO, and 50% (v/v) D-MEM/F12 in saline]
C, [6% (w/v) HES, 5% (v/v) DMSO, and 4% (w/v) BSA in saline]
D, [6% (w/v) HES and 5% (v/v) DMSO in saline]
E, [6% (w/v) HES, 5% (v/v) DMSO, and 5% (v/v) ethylene glycol (EG; WAKO) in saline]
Cells were then transferred to 2-mL cryovials (AGC, Tokyo, Japan) and immediately placed into a freezing container (NALGENE™ Cryo 1°C Freezing Container; Nalgene, USA) for cooling in a −80°C freezer. After storage in a −80°C freezer overnight, the vials were stored for at least 1 week in a −150°C freezer (Sanyo) prior to thawing for the evaluation of recovery rate. All freezing media were prepared just before use.
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3

Thermostability Characterization of Heme-Bound Proteins

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Thermostability was monitored by DSC in a PEAQ-DSC instrument (MicroCal). The heme-bound form was obtained by addition of excess of hemin chloride at a molar ratio of 3:1 (heme:protein). First, 6 mM hemin chloride was dissolved in 100% dimethyl sulfoxide (DMSO) (Wako) and subsequently serially diluted in decreasing concentrations of DMSO (100% to 60%, followed by dilution to 20% and in the last step to 10% DMSO). The diluted heme was added to the protein, to a final concentration of 300 μM heme and 100 μM protein in 5% DMSO. Removal of hemin excess was carried out in a PD-10 desalting column equilibrated in PBS buffer following the instructions of the manufacturer (Cytiva). Proteins were dialyzed overnight at 4 °C in PBS (no DMSO present) and prepared to a final protein concentration of 100 μM. Measurements were performed at a scan rate of 1 °C per minute from 20 °C to 90 °C. Filtered PBS buffer from the dialysis was used as the reference sample to obtain the baseline. The thermogram was evaluated after subtracting the baseline. The parameters of thermostability (melting temperature (TM), and enthalpy change (ΔH)) were determined with the software integrated in the instrument.
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4

Naringenin Dissolution in DMSO

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Naringenin (Tokyo Chemical Industry, Tokyo, Japan) was dissolved in dimethyl sulfoxide (DMSO; Fujifilm Wako Pure Chemical Corporation) at a concentration of 100 mg/mL. A corresponding concentration of DMSO was used for the control group.
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5

Induction of Metaxylem Differentiation in Cultured Cells

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Induction of metaxylem differentiation in cultured cells was performed as described previously (Oda et al., 2010 (link)). Briefly, 1 ml of 7-day-old suspension cells harboring LexA:VND6 was transferred into a 15-ml tube and diluted with 9 ml of MS medium without 2,4-dichlorophenoxyacetic acid. Cells were allowed to settle for 5 min, after which the upper 5 ml of the medium was removed to adjust cell density. The suspension culture was supplied with 2 μM estradiol (10 mM stock in DMSO, Fujifilm Wako) and 2 μM brassinolide (10 mM stock in DMSO, Fujifilm Wako), and cultured for 24 h. Transformation was performed as described previously (Oda et al., 2010 (link)). Seven-day-old cells were co-cultured with the Agrobacterium tumefaciens strain GV3101 MP90 (A gift from Dr Csaba Koncz, Max Plant Institute for Plant Breeding Research, Cologne, Germany) harboring LexA:ICR2-1×YPet and 35S:mScarleti-TUB6 for 48 h in MS medium supplemented with 50 mg/l of acetosyringone (Sigma-Aldrich). Claforan (0.5 mg/l; Aventis) was added to the culture, and the suspension cells were cultured for a further 5 days. Cell walls were labeled with WGA-Alexa Fluor 561 (Thermo Fisher Scientific).
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6

Pharmacological Modulation of Tumor Microenvironment

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5-FU (Kyowa Hakko, Tokyo, Japan) was administered to mice intraperitoneally (i.p.) at a dose of 150 mg/kg either as a single dose or once every 7 days two times. Recombinant Ang-1, Thpo and CXCL12 were purchased from R&D Systems (Minneapolis, MN) and diluted with phosphate-buffer saline (PBS). The pharmacological inhibitors PD98059 and LY294002 were purchased from Merck Millipore (Darmstadt, Germany) and diluted with dimethyl sulfoxide (DMSO; Wako, Osaka, Japan). The NF-κB inhibitor BAY-11-7082 (Wako) was reconstituted in DMSO (Wako) as a 10 mM stock solution and diluted with PBS. In animal experiments, BAY-11-7082 was administered i.p. at a dose of 10 mg/kg and mice were sacrificed after 12 h. The Sp1 inhibitor Mithramycin A (MIT) was purchased from Cayman Chemical (Ann Arbor, MI) and diluted with ethanol (Wako). Tolfenamic Acid (TA) was purchased from Wako and mixed with corn oil (Sigma, St. Louis, MO). MIT was administered i.p. once every 2 days, and TA was administered via oral gavage also once every 2 days. Verapamil was purchased from Eisai (Tokyo, Japan) and diluted with sterile water. LPS (Escherichia coli 055:B5) was purchased from FUJIFILM (Osaka, Japan) and diluted with PBS. LPS injections were administered intravenously (i.v.) at a dose of 250 µg/kg.
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7

Pharmacological Manipulation of Neuronal Activity

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DCZ (HY-42110, MedChemExpress) was dissolved in dimethyl sulfoxide (DMSO, FUJIFILM Wako Pure Chemical Co.), then diluted in saline to a final volume of 1 mL (2% DMSO in saline), thus achieving 0.1 mg kg−1 dose. Note that this dose of DCZ yields 80–90% hM4Di occupancy and affects behavioral performance via hM4Di activation in monkeys12 (link). Vehicle control was an i.m. injection of vehicle solution (2% DMSO in saline) at the same volume. Vehicle was delivered 15–20 min after delivery of the bicuculline. The first injection of DCZ was delivered 15–20 min after bicuculline (one case) or vehicle (5 cases). The second injection of DCZ was delivered 18–30 min after the first one (five cases). The timing of vehicle and DCZ administration for each session is summarized in Supplementary Table 1.
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8

Effect of 4-MU and HA on Cells

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4-MU was purchased from Nacalai Tesque, and diluted in dimethylsulfoxide (DMSO) (Wako Pure Chemical Industries, Ltd.) at a working concentration of 500 µM. We used DMSO at a final concentration of 0.05%. To clearly observe the effects of4-MU, 500 µM 4-MU was used, which also minimized the cytotoxic effects on normal fibroblast cells (16 (link)). LMW-HA (15–40 kDa, cat. no. GLR001) and HMW-HA (>950 kDa, cat. no. GLR002) were purchased from R&D Systems and used at working concentrations of 200 µg/ml and 100 µg/ml, respectively.
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9

Berberine Sulfate and Alkaloid Compound Preparation

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Berberine sulfate was purchased
from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan); troglitazone
and GW9662 from Wako Pure Chemical Industries, Ltd. (Osaka, Japan);
and sanguinarine chloride and rosiglitazone from Sigma-Aldrich (St.
Louis, MO, U.S.A.). DHS was prepared by reducing sanguinarine with
NaBH4 reduction.47 (link) The purity
was analyzed by LC–MS (see below and Figure S2). Alkaloid samples are diluted in DMSO (Wako) to a final
concentration of 0.1% DMSO in cell treatments. All other chemicals
were purchased from Wako, unless otherwise stated.
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10

Antibody Immunohistochemistry Workflow

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Ez was supplied by MSD, Tokyo, Japan. Ez was resolved in dimethyl sulfoxide (DMSO; Wako Pure Chemical Industry Ltd., Tokyo, Japan), and DMSO was used as a control. Antibodies used in this study were as follows: anti‐smooth muscle actin (Sigma, St. Louis, MO, USA), anti‐CD11b (Abcam, Cambridge, UK), and anti‐CD68 (KP1, Santa Cruz, CA, USA).
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