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Genomelab gexp start kit protocol

Manufactured by Beckman Coulter
Sourced in United States

The GenomeLab™ GeXP Start Kit protocol is a laboratory equipment product designed for gene expression analysis. It provides the necessary reagents and instructions for performing multiplex PCR and capillary electrophoresis to detect and quantify gene expression levels in samples.

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5 protocols using genomelab gexp start kit protocol

1

Quantitative Gene Expression Analysis

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Primers for the gene expression study were designed using the Rattus norvegicus gene sequences from the National Center for Biotechnology Information website (http://www.ncbi.nlm.nih.gov/nucleotide/) and tagged with an 18-nucleotide universal forward and 19-nucleotide universal reverse sequence, respectively. Primers (Table 2) were supplied by Integrated DNA Technologies (Singapore) and reconstituted in RNAse free water. Extracted RNA (20 ng) from liver and adipose tissues was used for reverse transcription and PCR according to the GenomeLab GeXP Start Kit protocol (Beckman Coulter, USA) using the conditions shown in Table 2. PCR products (1 μL) were analyzed on a GeXP genomelab genetic analysis system (Beckman Coulter, Inc., Miami, FL, USA) after mixing with sample loading solution and DNA size standard 400 as recommended by the manufacturer. Results were analyzed with the Fragment Analysis module of the GeXP system software and normalized on the eXpress Profiler software. Fold changes were calculated by dividing the expression value for the different treatment groups by the expression value for the normal group.
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2

RNA Extraction and RT-PCR from Tissues

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RNA was extracted from liver and adipose tissues using the total RNA isolation kit (RBC Biotech Corp., Taipei, Taiwan) according to the manufacturer's instructions. Reverse transcription (20 ng) and PCR were done according to the GenomeLab GeXP Start Kit protocol (Beckman Coulter, USA), using the conditions shown in Table 3.
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3

RNA Isolation and Reverse Transcription Protocol

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RNA was extracted using an RNA isolation kit (RBC Biotech Corp., Taipei, Taiwan) and diluted to 20 ng/mL. Reverse transcription and PCR programs were performed according to the GenomeLab™ GeXP Start Kit protocol (Beckman Coulter, USA), as shown in Table 1.
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4

RNA Extraction and RT-PCR Protocol

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RNA was extracted using a Total RNA isolation kit (RBC Biotech Corp., Taipei, Taiwan), and diluted to 20 ng/mL. Reverse transcription and polymerase chain reaction (PCR) program were performed according to the GenomeLab™ GeXP Start Kit protocol (Beckman Coulter, Inc, Miami, FL, USA), as shown in Table 2.
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5

Liver Gene Expression Analysis

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RNA was extracted from liver using RNA extraction kit. Nanospectrophotometer was used to measure the concentration and purity of all RNA samples. RNA samples were diluted to 20 ng/µL prior to gene expression study. Primers were designed online (www.ncbi.nlm.nih.gov/nucleotide/) using the Rattus norvegicus gene sequences. All the forward and reverse sequences were tagged with universal forward and universal reverse sequences (Table 2). Primers were purchased from Integrated DNA Technologies (Singapore city, Singapore) and reconstituted in RNAse free water. Reverse transcription and PCR were performed according to the GenomeLab™ GeXP Start Kit protocol (Beckman Coulter, Inc.). After RT and PCR, 1 µL of PCR product was analyzed on GeXP genomelab genetic analysis system (Beckman Coulter, Inc.) after mixing with sample loading solution and DNA size standard 400 according the manufacturer's instruction. The results were analyzed using Fragment Analysis module of the GeXP system software and normalization was done using eXpress Profiler software.
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