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15 protocols using anti brd4

1

Quantifying BRD Protein Expression in Cancer Cells

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Cells were seeded in T75 flasks (10000–50000 cells/ml) and treated 24 h later with OTX015 GI50 concentrations for 24, 48 and 72 h. Untreated cells were used as controls. Cells were lysed in 50 mM Tris–HCl pH 6.8, 2% SDS, 100 mM 2-mercaptoethanol, 10% glycerol and 0.05% bromophenol blue, and sonicated to shear DNA. Cell lysates (10 μg) were resolved by SDS–PAGE, and probed with the anti-BRD2 (cat. ab139690, Abcam, UK), anti-BRD3 (cat. ab56342, Abcam), anti-BRD4 (cat. sc-48772, USA) and anti-β-tubulin (cat. sc-9104, Santa Cruz) primary antibodies. All blots were incubated with horseradish peroxidase conjugated anti-rabbit or anti-mouse secondary antibodies (cat. sc-2004 and sc-2005, respectively; Santa Cruz) and developed by enhanced chemiluminescence (Thermo Scientific, USA; cat. 34080).
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2

Immunoprecipitation of EGFP and Brd4 Complexes

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Cells were transfected with plasmids as indicated. At 48 h after transfection, cell lysates were harvested in NP-40 lysis buffer (300 mM NaCl, 1% NP-40, 50 mM Tris [8.0], and 1 mM phenylmethylsulfonyl fluoride [PMSF] and protease inhibitors). The lysates were subjected to sonication and centrifugation (13,000 rpm at 4°C for 15 min), and the buffer was adjusted to 150 mM salt by mixing with an equal volume of lysis buffer without NaCl. Immunoprecipitation was performed with the antibodies indicated at 4°C for 16 h. For western blotting, proteins were separated on SDS-PAGE, blotted with specific antibodies, and detected by using an ECL Western blotting detection system (Amersham Biosciences). The following antibodies were used: anti-EGFP (Clontech), anti-Brd4 (Abcam, ab128874), anti-β-actin (Sigma).
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3

Immunohistochemical Analysis of Tumor Markers

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For immunohistochemistry, tumor nodules of the nude mice were collected and were fixed in 10% neutral-buffered formalin and embedded in paraffin, after 5 μm paraffin sections were performed, tissue sections were treated with Peroxidase Blocking Reagent (Bio-rad) and Background Sniper (Biocare Medical, Concord, CA, USA), and then incubated with anti-BRD4 (1:500, Abcam), anti-Ki-67 (1:500, Abcam) or anti-Bax (1:250, Abcam) for 1 h at room temperature. After incubation with MACH 4 Universal HRP Polymer and diaminobenzidine (DAB Biocare Medical), counterstaining with hematoxylin were performed.
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4

Western Blot Analysis of Protein Expression

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Total proteins of thecells were extracted by lysis buffer (Tris-HCl, PH 8.0, 400 mM NaCl, 5 mM EDTA, 1 mM EGTA, 1 mM Na pyrophosphate, 1% Triton X-100, 10% glycerol), with supplement of protease inhibitors (Roche, Indianapolis, IN). The protein concentration was determined by a BCA kit (Piece, Rockford, IL). Then protein was loaded onto 12% SDS-PAGE gel and was electronically transferred to PVDF membranes (Millipore, Billerica, MA). Primary and secondary antibodies were then incubated to the membranes. The HRP-conjugated secondary antibody (1:5000, Sigma-Aldrich) was incubated for 2 h atroom temperature. Protein signals were detected via ECL method. The primary antibodies used in this study includes anti-BRD4 (1:1000, Abcam), anti-c-Myc (1:1000, Abcam), anti-CyclinD1 (1:1000, Abcam), anti-CDK4 (1:1000, Abcam), anti-MMP2 (1:1000, Abcam), anti-MMP9 (1:1000, Abcam), anti-CtIP (1:1000, Abcam), anti-CD274 (1:1000, Abcam), anti-KRAS (1:500, Abcam), anti-E-cadherin (1:10000, Abcam), anti-N-cadherin (1:1000, Abcam), anti-Vimentin (1:3000, Abcam) and anti-GAPDH (1:1000, Abcam). All the primary antibodies were incubated for 4 h at 37 °C.
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5

Protein Expression Analysis by Western Blotting

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Tissues and cells were lysed in RIPA buffer (cat#V900854, Sigma, MO, USA) and protein concentration was measured with the BCA method (cat#P0012, Beyotime, Shanghai, China). Proteins were isolated by SDS-PAGE, transferred to PVDF membranes (Millipore, Billerica, USA), incubated with primary and secondary antibodies and imaged with the ECL detection reagent (cat#12630, CST, California, USA) using a ChemiDoc™ XRS+ System. The primary antibodies included anti-Mus81 (1:1,000; cat#ab14387, Abcam, Cambridge, UK), anti-BRD4 (1:1,000; cat#ab128874, Abcam), anti-ZEB1 (1:1,000; cat#ab180905, Abcam), anti-E-cadherin (1:1,000; cat#3195, CST, California, USA), anti-N-cadherin (1:1,000; cat#13116, CST), anti-Snail1 (1:1,000; cat#9782, CST), anti-ZEB2 (1:1,000; cat#14026-1-AP, Proteintech, Wuhan, China), anti-Sirt5 (1:500; cat#15122-1-AP, Proteintech), anti-GAPDH (1:5,000; cat#G9545, Sigma). The secondary antibodies included HRP conjugated goat anti-Rabbit (1:3,000; SA00001-15, Proteintech) and anti-Mouse (1:3000; cat# SA00001-1, Proteintech).
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6

Western Blot Analysis of Prostate Cancer Proteins

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The total proteins were extracted from PCa cells lysed in RIPA buffer according to the manufacturer's instructions and quantified by BCA assay (Beyotime, Shanghai, China). The protein were analyzed by 10% sodium dodecyl sulfate polyacrylamide gels (SDS‐PAGE) and the gels were transferred onto a polyvinylidene fluoride (PVDF) membrane blocked with 5% nonfat dried milk in TBST for 1 hour. Afterward, the PVDF membranes were incubated with specifc primary antibodies overnight at 4°C. After washing three times with TBST buffer, the membranes were then incubated with 1:2000 secondary antibodies for 1 hour and the bands were visualized by an enhanced chemiluminescence (ECL, Millipore, USA). The primary antibodies used in the present study included anti‐BRD4 (1:1000, Abcam, USA), anti‐AR (1:200, Abcam, USA), anti‐AR‐V7 antibody (1:1000, Abcam, USA), and anti‐C‐myc antibody (1:1000, Abcam, USA). GAPDH was used as an internal control.
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7

Brd4 Protein Quantification by Western Blot

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Undifferentiated 20D-17 cells were seeded at a density of 1.0 × 105 cells in a 10 cm dish. Two days after seeding, 0.2 μM JQ1 was added for 24 hours. Cultured cells were treated according to the conditions indicated above; then, proteins were extracted using radioimmunoprecipitation assay buffer (#9806, Cell Signaling Technology, Inc., Danvers, MA). Total proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), followed by immunoblotting. Western blotting was performed with the ChemiDoc™ Imaging System (Bio-Rad Laboratories, Inc.). Quantification of protein signals was performed using Image Lab Software, according to the manufacturer's protocol (Bio-Rad Laboratories, Inc.). The primary antibody was anti-Brd4 (dilution 1 : 2000) (Abcam, ab128874). Secondary antibodies were anti-rabbit IgG horseradish peroxidase- (HRP-) conjugated (1 : 2000, Cell Signaling Technology, Inc., 7074). Proteins were visualized using enhanced Western Lightning® Plus-ECL (Perkin Elmer, Inc., Waltham, MA, NEL104001EA), according to the manufacturer's recommendations.
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8

Protein Extraction and Immunoblotting

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Lysis buffer (Beyotime) supplemented with 1% phenylmethylsulfonyl fluoride (Beyotime) was used to extract total protein from cells. Cell extracts were centrifuged at 12,000g for 15 min, and the supernatant was collected. Cell lysates were resolved on 8% acrylamide gradient SDS–polyacrylamide gel electrophoresis gels and transferred to polyvinylidene difluoride membranes (Millipore). The membranes were blocked with 5% nonfat milk in tris-buffered saline containing 0.1% Tween 20 for 1 hour, then incubated with anti-BRD4 (1:1000 dilution; Abcam) and anti–β-actin (1:10000 dilution; Sungenebiotech) antibody followed by horseradish peroxidase–conjugated secondary antibody, and detected by immunoblotting with the High-Sensitivity ECL Chemiluminescence Detection Kit (Vazyme) or Super ECL Detection Reagent (Yeasen Biotech).
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9

Western Blot Analysis of Protein Expression

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Cells were harvested and lysed on ice with RIPA buffer. The protein samples were analyzed on 10% or 12% SDS-PAGE and transferred onto a polyvinylidene fluoride (PVDF) membrane. The membranes were blocked with 5% non-fat milk for one hour at room temperature, washed three times in TBST, and incubated with the primary antibody overnight at 4 °C. The membranes were washed three times with TBST and incubated with horseradish peroxidase secondary antibodies (ABclonal, Wuhan, China) for one hour at room temperature. The bands were detected using Western ECL Blotting Substrates according to the manufacturer's protocols. The following primary antibodies were used: anti-SPP1 (ProMab, Richmond, USA); anti-BRD4 (Abcam, Cambridge, USA); anti-NFKB2 (ProMab, Richmond, USA); anti-MMP2 (Proteintech, Wuhan, China); anti-Actin (Santa Cruz, Dallas, USA).
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10

Histological Evaluation of Kidney Fibrosis

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Sections (4 µm thick) from 10% formalin-fixed, paraffin-embedded kidney tissues were used for hematoxylin and eosin staining and Masson's trichrome staining. The ratio of the fibrotic area was assessed by outlining the blue staining of five randomly selected microscopic fields from each kidney using Image-Proplus software. Immunohistochemistry was performed using a Polink-1 one-step polymer detection system (ZSGB-BIO, Beijing, China). Briefly, the kidney sections were stained with anti-α-SMA (Beyotime, Jiangsu, China), anti-Brd4 (Abcam, Cambridge, UK), anti-fibronectin (Abcam, Cambridge, UK), and anti-collagen IV (Abcam, Cambridge, UK) antibodies, followed by incubation with secondary antibodies, and then detected with the EnVision/HRP Kit (Dako, Denmark).
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