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Sigma protease inhibitor

Manufactured by Merck Group
Sourced in United States, Canada

The Sigma protease inhibitor is a laboratory reagent used in protein research and analysis. It functions as a broad-spectrum inhibitor of proteases, which are enzymes that break down proteins. The Sigma protease inhibitor helps to preserve the integrity of protein samples by preventing unwanted proteolysis during experimental procedures.

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13 protocols using sigma protease inhibitor

1

Production and Purification of HIV Gag-KSK Coil

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The HIV Gag-KSK coil fusion protein was produced using an expression construct encoding the p41 region of the HIV Gag (HXB2) gene fused to the KSK coil peptide sequence IAALKSKIAALKSEIAALKSKIAALKSK. Briefly, a 1,131 bp fragment from HIV Gag p41 was prepared with the following additions: an N-terminal His8 tag followed by the Tobacco Etch Virus endopeptidase (TEV) cleavage site ENLYFQS, and a C-terminal Gly10 spacer followed by the KSK coil. This sequence was codon optimized for expression in E. coli and synthesised commercially (DNA2.0, USA) before sub-cloning into a T7-driven expression plasmid (OG37) (Oxford Genetics, UK) for expression and purification from E. coli. The His-tagged Gag-coil fusion protein was purified from cell lysates and Sigma Protease Inhibitors (P8849, Sigma) were added to prevent proteolysis. Cell lysate was loaded onto a 10 mL IMAC column (Thermo Scientific) and eluted with Imidazole. Fractions containing the Gag-coil fusion protein were extracted with Triton X-114 (Sigma) at 1% to remove endotoxin and then buffer exchanged into 20 mM HEPES, pH 7.3, 300 mM NaCl and 2 mM β-mercaptoethanol to a final concentration of 1.7 mg/mL HIV Gag-coil (< 2.9 EU/mg protein).
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2

Production and Purification of HIV Gag-KSK Coil

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The HIV Gag-KSK coil fusion protein was produced using an expression construct encoding the p41 region of the HIV Gag (HXB2) gene fused to the KSK coil peptide sequence IAALKSKIAALKSEIAALKSKIAALKSK. Briefly, a 1,131 bp fragment from HIV Gag p41 was prepared with the following additions: an N-terminal His8 tag followed by the Tobacco Etch Virus endopeptidase (TEV) cleavage site ENLYFQS, and a C-terminal Gly10 spacer followed by the KSK coil. This sequence was codon optimized for expression in E. coli and synthesised commercially (DNA2.0, USA) before sub-cloning into a T7-driven expression plasmid (OG37) (Oxford Genetics, UK) for expression and purification from E. coli. The His-tagged Gag-coil fusion protein was purified from cell lysates and Sigma Protease Inhibitors (P8849, Sigma) were added to prevent proteolysis. Cell lysate was loaded onto a 10 mL IMAC column (Thermo Scientific) and eluted with Imidazole. Fractions containing the Gag-coil fusion protein were extracted with Triton X-114 (Sigma) at 1% to remove endotoxin and then buffer exchanged into 20 mM HEPES, pH 7.3, 300 mM NaCl and 2 mM β-mercaptoethanol to a final concentration of 1.7 mg/mL HIV Gag-coil (< 2.9 EU/mg protein).
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3

Western Blot Analysis of Protein Pin1

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For Western blots, frozen temporal cortical blocks were lysed in a solution containing 20mM Tris pH7.5, 0.5% Nonident (Sigma), 1mM EDTA (Sigma), 0.1M NaCl (Sigma), 1mM PMSF (Sigma), Sigma protease inhibitors 1, 2, and complete protease inhibitor cocktail (Roche). Protein concentrations were determined by BCA assay (Pierce) using bovine serum albumin as the standard. A total of 40µg of sample protein was combined with Laemmli sample buffer for separation by SDS-PAGE, followed by transfer to PVDF membrane (Bio-Rad). Membranes were blocked using 5% non-fat dry milk and probed with anti-Pin1. After incubation with the primary antibody, membranes were washed, incubated with the secondary antibody, washed again, reacted with chemiluminescence substrate (Pierce), and imaged on Amersham imager 680 (GE). Exposure 1.5 minutes.
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4

Comprehensive Metabolic Hormone Analysis

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At each time point, blood was collected in a vacutainer treated with EDTA (BD Vacutainer®) and placed on ice immediately for later glucose analysis via the glucose oxidase method using a colorimetric assay (Cayman Chemical Company, Ann Arbor, MI, USA). In addition, EDTA tubes were treated with diprotinin-A (0.034 g/L blood; MP Biomedicals), sigma protease inhibitor (1 g/L blood; Sigma-Aldrich, St. Louis, MO, USA) and Roche Pefabloc (1 g/L of blood) for analysis of gut and metabolic hormones. After blood collection, samples were centrifuged and the supernatant was collected and frozen at −80 °C for later determination. Metabolic-related hormones were simultaneously quantified by a multiplex assay (Millipore, St. Charles, MO, USA) according to the manufacturer’s protocol. Analytes included C-Peptide, ghrelin, glucose-dependent insulinotropic peptide (GIP), glucagon-like peptide-1 (GLP-1) (active), glucagon, insulin, leptin and pancreatic polypeptide YY (PYY) (total). The assay sensitivities of these markers ranged from 0.6–87 pg/mL.
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5

Metabolic Biomarkers during Glucose Tolerance Test

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At each of the five time points during the OGTT, additional blood samples will be collected for measurement of satiety hormones including insulin. Blood will be drawn into a cooled EDTA vacutainer tube containing diprotinin-A (0.034 mg/ml blood; MP Biomedicals, Irvine, CA); Sigma protease inhibitor (1 mg/ml blood; Sigma Aldrich, Oakville, ON, Canada) and Roche Pefabloc (1 mg/ml of blood; Roche, Mississauga, ON, Canada) [72 (link)]. Blood will be centrifuged within 30 min and plasma analyzed for ghrelin (active), insulin, leptin, glucose-dependent insulinotropic polypeptide (GIP) (total), GLP-1 (active), and PYY (total) concentrations using a Milliplex MAP Human Gut Hormone Panel Kit (Millipore, St Charles, MO). Surrogate markers of insulin resistance, HOMA and QUICKI, will be quantified as per our previous work [99 (link)].
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6

Biomarker Sampling and Analysis Protocol

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At each time point, approximately 5 mL of venous blood was collected. Samples were aliquoted into a 2 mL into a K2EDTA plasma vacutainer, 2 mL into a serum vacutainer, and 1 mL into an Eppendorf tube containing EDTA, diprotinin-A (0.034 g/L blood; MP Biomedicals), sigma protease inhibitor (1 g/L blood; Sigma Aldrich), and Roche Pefabloc® SC (1 g/L of blood, Sigma Aldrich) to preserve analytes. Tubes were centrifuged for 15 min at 4°C. Supernatant was removed from each sample and transferred into a new labeled Eppendorf tube for storage at −80°C until analysis. Blood samples collected in Study A were assessed by a custom Human Metabolic Array [C-peptide, glucagon, gastric inhibitory peptide (GIP), glucagon-like peptide-1 (GLP-1 active), insulin and peptide YY (total)] (Milliplex Multiplex, Eve Technologies, University of Calgary). A glucose oxidase assay kit used plasma samples to measure plasma glucose concentrations at all time points (Sigma Aldrich). Serum paracetamol concentrations, determined using a paracetamol assay kit (Cambridge Life Science), were used to track gastric emptying. Several studies have demonstrated paracetamol concentrations to be a valid measure of gastric emptying (10 (link), 11 (link)).
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7

Plasma Metabolite Measurements in Rodents

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The animals were anesthetized using isoflurane and denied access to food overnight for a 12 h fast; 1 mL of blood was collected from the portal vein in a chilled tube containing diprotinin-A (0.034 mg/mL blood; MP Biomedicals, Irvine, CA, USA), Sigma protease inhibitor (1 mg/mL blood; Sigma Aldrich, Oakville, ON, Canada) and Roche Pefabloc (1 mg/mL of blood; Roche, Mississauga, ON, Canada). Plasma was collected after centrifugation and stored in −80 °C until insulin, peptide tyrosine tyrosine (PYY) and glucagon-like peptide 1 (GLP-1) were measured using a Rat Metabolic Multiplex Array (MRDMET) (Millipore, St. Charles, MO, USA) (Eve Technologies, Calgary, AB, Canada). The animals were henceforth euthanized via decapitation and heart, liver, kidney, cecum, colon and male testes were weighed and stored in −80 °C until analysis. The Homeostatic Model Assessment of Insulin Resistance (HOMA-IR) was used to estimate insulin resistance using the following formula [80 (link)]:
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8

Glucose Tolerance and Gut Hormone Assessment

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Following overnight feed removal, a fasted blood samples was collected from a tail nick and glucose concentrations measured immediately using a One Touch Blood Glucose Meter (BD Biosciences). Immediately following the fasted blood sample, a 2 g/kg glucose load was administered via oral gavage, and additional blood glucose measurements made at 15, 30, 60, 90, and 120 min. At the fasting time point, a whole blood sample was collected into tubes containing diprotin-A (0.034 g/L blood: MP Biomedicals, Irvine, CA, USA), Sigma protease inhibitor (1 g/L blood: Sigma Aldrich, Oakville, ON, Canada), and Roche Pefabloc (1 g/L of blood: Roche, Mississauga, ON, Canada) and allowed to clot before centrifugation. Serum concentrations of active GLP-1, total PYY, total GIP, active ghrelin, leptin, and insulin were measured with the Milliplex Rat Gut Hormone Panel kit (Millipore, Billerica, MA, USA). The sensitivity of the kit is as follows (minimum detectable concentration in picograms per milliliter in brackets): GLP-1 (28), GIP (1), ghrelin (2), insulin (28), leptin (27), and PYY (16). The intra-assay variation is <7%, and inter-assay variation is <24%. Insulin resistance was calculated using HOMA-IR with the formula: fasting insulin (μU/ml) × fasting glucose (mmol/l) divided by 22.5. The composite insulin sensitivity index (CISI) was calculated as previously described (17 (link)).
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9

Immunoblotting analysis of gastric H+/K+ ATPase

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Pancreatic cells, stomach and colon from mice were lysed by adding 5x diluted lysis buffer (50 mM Tris-base, 0.25 M NaCl, 10 mM EDTA, 0.5% NP40, 1% TritonX-100, 4 mM NaF, pH 7.5). The final lysates were centrifuged at 15,000 g, 4°C for 15 min. Protein concentration was estimated using Coomassie protein assay (Thermo Scientific). Mouse stomach and colon were used as positive control. All solutions contained 1× Sigma protease inhibitor (Sigma S8820). Protein samples were loaded on 10% polyacrylamide precast gels (Invitrogen), separated by electrophoresis, and blotted to PVDF membranes (Invitrogen). Membranes were blocked with 5% skim milk solution in TBS-Tween (0.1%) buffer for 1 h at room temperature and incubated overnight at 4°C with primary antibodies against gastric HKα1(1:1000 rabbit monoclonal, Abcam, EPR12251 or polyclonal Calbiochem 119101), HKβ (1:1000 mouse monoclonal 2G11, Sigma, A274), non-gastric HKα2 (1:1000 rabbit polyclonal, Sigma, HPA039526) or antibody (C384-M79) [28 (link)], kindly donated by J. J. H. H. M. De Pont and H. G. P. Swarts, and β-Actin (1:1000 mouse monoclonal C4, Santa Cruz, Sc-47778). Blots were then incubated with appropriate HRP-conjugated antibodies (DAKO or Santa Cruz), developed with EZ-ECL (Biological Industries) and visualized on Fusion FX (Vilber Lourmat) and band intensity was calculated using Bio1D software.
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10

Oral Glucose Tolerance Test in Rats

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One day prior to testing, rats (n = 6) were weighed and randomly assigned to 1 of 4 test groups: (1) Dextrose; (2) Ensure®; (3) Mixed meal; or (4) Saline. Following overnight feed deprivation with access to water, rats were given an oral gavage of the test solutions standardized to provide 2 g CHO/kg body weight or an equivalent volume of saline. Blood was sampled via tail nick at 0, 15, 30, 60, 90, and 120 min post-gavage and immediately analyzed for glucose using a blood glucose meter (OneTouch Glucose Meter, Lifescan Inc., Milpitas, CA). At the same time, blood was collected in a chilled tube containing diprotinin-A (0.068 mg/ml blood; MP Biomedicals, Irvine, CA), Sigma protease inhibitor (1 mg/ml blood; Sigma Aldrich, Oakville, ON, Canada) and Roche Pefabloc (1 mg/ml of blood; Roche, Mississauga, ON, Canada). Plasma was stored at −80°C until analysis for satiety hormones.
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