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9 protocols using indirubin

1

Quantification of Indigo, Indirubin, and Tryptanthrin in Sticta cusia

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S. cusia organs were dried in a constant temperature drying oven at 60 °C, and powdered. Chemical extraction of each sample (10 mg for each sample) was extracted by ultrasound extraction for three times (30 min) using solvent consisting of N,N-Dimethylformamide: methanol (1:1, v/v) with a final volume of 10 mL. Chemical standards of indigo, indirubin and tryptanthrin were purchased at Sigma-Aldrich (St. Louis, MO). The chemical constituents were detected by liquid chromatography (Agilent 1290, Agilent Technologies, Santa Clara, CA). Gradient elution chromatography was applied. A mobile phase consisting of methanol: water with 0.2% formic acid solution (40-95%, v/v) was used, with the flow rate is set to 1 mL·min− 1 and the run time is 30 min. The detection wavelength was 289 nm. Detection and quantification of compounds compared with authentic standard curves and retention times (RT, tryptanthrin, 9.53 min, indigo, 12.850 min, and indirubin, 16.640 min. Figure S8).
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2

Formulation and Characterization of MT-102

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MT-102 was provided by MTHERA PHARMA (Seoul, Korea). Indirubin, 6-methoxy flavone, and (2-hydroxypropyl)-β-cyclodextrin were obtained from Sigma Aldrich (St. Louis, MO, USA). Poloxamer 188 (Kolliphor®, P188), poloxamer 407 (Kolliphor®, P407), povidone K30 (Kollidon®30, PVP K30), and copovidone K28 (Kollidon® VA 64, Co-PVP) were provided by BASF-Korea (Seoul, Korea). Hydroxypropyl methyl cellulose E5 (Methocel®, HPMC E5) was obtained from Colorcon Asia Pacific PTE LTD. (Korea Branch, Suwon, Korea). Polyethylene glycol 6000 (PEG 6000) was obtained from the Daejung Chemical & Metal Co., Ltd. (Shiheung, Korea). Low-substituted hydroxypropyl cellulose (L-HPC) was purchased from Shin-Etsu (Tokyo, Japan). All the other chemicals were of analytical grade, and all the solvents were of high-performance liquid chromatography (HPLC) grade.
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3

Indirubin Binding Protein Complex

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Indirubin was purchased from Sigma-Aldrich (catalogue number SML0280). The compound was dissolved at 20 μM in DMSO (Sigma-Aldrich) and added to the protein solution at a 5x molar excess and 0.25% (v/v) final DMSO concentration. Before preparation of the grids, the complexes were incubated on ice for 1 h to allow sufficient time for binding.
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4

Keratinocyte Inflammation Modulation by Isatin, Tryptanthrin, Indirubin

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Normal human adult keratinocytes (Lonza) were seeded into 48-well culture plates and cultured to passage three with an approximate density of 70–80%. Keratinocytes were stimulated with IL-17A (100 ng/mL) (R&D Systems, Inc., Minneapolis, MN) and treated with varying concentrations of isatin, tryptanthrin, and indirubin (Sigma-Aldrich, St. Louis, MO), and a control compound, PD 0325901 [33 (link)]. PD 0325901 is a mitogen-activated protein kinase kinase (MEK) inhibitor; a similar compound has been demonstrated to inhibit IL-17-induced cytokine release [34 (link)]. Cell viability was confirmed using the PrestoBlue® assay (Thermo Fisher Scientific, Waltham, MA). tryptanthrin showed no impact on cell viability at all testing concentrations. Tissue culture supernatants were analyzed for pro-inflammatory cytokines IL-6 and IL-8 using MesoScale Discovery V-plex assay (MesoScale Discovery, Rockville, MD). Data were analyzed using Graphpad Prism v5.0 (http://www.graphpad.com).
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5

Aryl-hydrocarbon receptor reporter assay

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Aryl-hydrocarbon receptor activity was measured using a stably transfected gene reporter human cell line AZ-AhR30 (link). Briefly, 2 × 104 cells/well were seeded in 96-well plates and incubated for 18 hours at 37 °C and 5% CO2, before cells were stimulated 18 h in triplets with acrolein, cinnamaldehyde, crotonaldehyde, propanal and methacrolein (all from Sigma) in increasing concentrations (0.018/0.18/1.8/9/18/45/90/180 μM) was used as negative control, whereas indirubin (0.03 μg/ml, Sigma) was used as a positive control and as AhR-antagonists resveratrol 100 μM (Sigma) and 3′-methoxy-4′-nitroflavone 5 μM (Sigma). After adding lysis buffer and a single freeze-thaw cycle, 20 μl/well of lysates were transferred into a black 96-well flat-bottom plate (Thermo Scientific) and bioluminescent reaction were started with addition of 100 μl/well of luciferase assay reagent (Promega). Chemiluminscence was measured (10 sec/well) using a spectrophotometer Tecan InfiniteM200 PRO.
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6

Indirubin Screening and Compound Characterization

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The chemical compounds derived from CMAP screening were purchased from Chemical Biology Technology Platform of Chinese Academy of Sciences (shanghai, china) and applied in a dose of 10 μM (final concentration) for each drug within cell experiments. Indirubin used in animal treatment was purchased from MedChemExpress (Catalog No.: HY-N117; CAS No.: 479–41-4; Purity: >98%, Monmouth Junction, NJ). Indirubin was first dissolved in dimethyl sulfoxide (DMSO) and stored in the dark at − 20 °C. During our experiments, Indirubin was diluted into corresponding concentration with the Corn oil (Sigma-Aldrich). All the other chemicals were purchased from Sigma Chemical Co. (St. Louis, MO, USA) unless otherwise specified. The primary antibodies included anti-UCP1 (Abcam, ab10983 and ab23841), anti-PGC1α (Santa Cruze Biotechnology, sc-13,067), anti-OXPHOS (Abcam, ab110413), anti- phospho-(Ser/Thr) PKA Substrate (Cell Signaling Technology, #9621), anti-phospho-CREB (Cell Signaling Technology, #4276S, San Antonio, TX, USA), anti-VDAC1 (Cell Signaling Technology, #4661), anti-β-Tubulin (Cell Signaling Technology, #2146).
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7

Synthesis and Characterization of Chlorinated Biphenyls

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TCDD was obtained from Dr. S. Safe (Texas A&M University). 3,3’,4,4’-Tetrachlorobiphenyl (PCB77) and 3,3’,4,4’,5-pentachlorobiphenyl (PCB126) were from AccuStandard (New Haven, CT), CH223191 from Chembridge Corp (San Diego, CA), beta-naphthoflavone (BNF), 3-methylcholanthene (3-MC), dibenz(a,h)anthracene (DBA), indirubin, tenidap and leptomycin B (LMB) were obtained from Sigma-Aldrich (Milwaukee, WI).
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8

Cervical Cancer Cell Line Culture

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Human cervical cancer cell lines A2780 and OVCAR3 were purchased from the cell bank of Shanghai Institute of Biochemistry and Cell Biology (Shanghai, China). The cells were cultured in Roswell Park Memorial Institute 1640 medium with 10% fetal bovine serum (Thermo Fisher Scientific, Waltham, MA, USA), 100 U/mL of penicillin and 100 µg/mL of streptomycin (Thermo Fisher Scien tific) in a 5% CO2 incubator at 37°C. Indirubin was purchased from Sigma-Aldrich (San Francisco, CA, USA). Colivelin was purchased from Santa Cruz Biotechnology (sc-361153, Santa Cruz, CA, USA).
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9

Evaluation of Neuroprotective Compounds

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Indirubin was obtained from Sigma-Aldrich Chemicals (Bornem, Belgium), BIO-acetoxime was purchased from Tocris Bioscience (Bristol, United Kingdom) and chosen because of its high inhibitory activity towards GSK-3, roscovitine from Selleckchem (Houston, USA), pilocarpine.HCl and PTZ from Sigma (St Louis, MO, USA). All other chemicals were analytical reagent grade and were obtained from Merck (Darmstadt, Germany). Aqueous solutions were prepared in fresh water purified by an arium pro UV system (Sartorius Stedim Biotech GmbH, Goettingen, Germany). Prior to their systemic administration in rodents, Indirubin and BIOacetoxime were dissolved in propyleenglycol:saline (50:50). Since the metabolic and chemical stability of the compounds is unknown, solutions were freshly prepared and syringes (protected from light) were filled ex tempore to minimize the influence of possible degradation.
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