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27 protocols using anti ck19

1

Western Blot Analysis of Liver Cancer Cells

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Following culture in MRC-5-CM for 14 days, whole liver cancer cells were lysed on ice in a lysis buffer (RIPA, Beyotime, Shanghai, China) with a protease inhibitor mixture cocktail (Roche, Switzerland). After centrifugation at 12000rpm for 30 minutes at 4℃, the protein concentrations of supernatants in samples were measured by the BCA protein assay (Thermo scientific, Rockford, IL, USA). Equal amounts of protein (50μg) were separated by 10%-12% NUPAGE Bis-tris Gel (Invitrogen, CA, USA) electrophoresis (constant voltage: 120mv) and transferred onto polyvinylidene fluoride (PVDF, 0.45μm) membranes (constant current: 350mA for 70/120 min). After being blocked by Tris-buffered saline and Tween 20 (TBST) buffer containing 5% non-fat powder milk for 2h, the membranes were incubated with primary antibodies overnight on ice. After washing the membranes several times in TBST while agitating, detection was performed using the appropriate secondary HRP-conjugated anti-mouse or anti-rabbit antibody. Immunoreactive bands on the blots were visualized with enhanced chemiluminescence reagent ECL kit (Beit Haemek, Israel). Anti-GAPDH, anti-WNT-2, anti-WNT-5B, anti-WNT16, anti-TGFB1, anti-CTNNB1, anti-IL6, anti-Nanog, anti-OCT4 and anti-CK19 primary antibodies were purchased from (Epitomics).
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2

Optimized Western Blot Procedure

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The WB procedure was performed as described previously
[39 (link)] with some modifications. Briefly, after transient transfection with plasmids, cells were harvested and lysed in a lysis buffer containing a cocktail of protease inhibitors. After centrifugation at 12,000 rpm for 15 min at 4°C, supernatants were collected, mixed with dithiothreitol, and used for WB. The ProteoExtract® Subcellular Proteome Extraction Kit (Millipore) was used for extraction of subcellular fractions following the manufacturer’s protocol. Equal amounts of protein extract were electrophoresed in 10% SDS-PAGE gels and then transferred to nitrocellulose membranes. The membranes were blocked with 5% bovine serum albumin (BSA) at room temperature (RT) for 1 h, incubated with the primary antibody overnight at 4°C, and incubated with the secondary antibody at room temperature for 1 h. Blots were washed in Tris-buffered saline with 0.1% Tween-20 and proteins were visualized by chemiluminescence. The following antibodies were used for WB: anti-SOX1 (IB 1:2000, Epitomics, CA, USA), anti-CK19 (1:8000, Epitomics), anti-CK18 (1:4000, Epitomics), anti-CK13 (1:4000, Epitomics), anti-CK8 (1:4000, Epitomics), anti-Involucrin (1:4000, Abcam, MA, USA), anti-GAPDH (1:10000, ProteinTec Group, IL, USA), anti-c-Myc (N-262) (1:2000, Santa Cruz Biotechnology, CA, USA), and anti-β-catenin (1:2000, Upstate, NY, USA).
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3

Liver Pathology Analysis via Immunohistochemistry

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Mice were sacrificed by carbon dioxide asphyxiation. Livers were fixed in 4% formalin overnight, embedded in paraffin, sectioned at 4 μm and stained with hematoxylin and eosin (H&E) for pathology. Liver sections were de-waxed, rehydrated and stained using standard immunohistochemistry protocols32 (link). The following antibodies were used: anti-Pten (Cell Signaling, 9559, 1:100), anti-pAkt S473 (Cell Signaling, 4060, 1:50), β-Catenin (BD,610154, 1:100), anti-p53 (CM5, 1:300), anti-GS (BD 610517, 1:200) and anti-Ck19 (Abcam, ab133496, 1:100). The number of hepatocytes was quantified from >3 low-magnification fields per mouse with 5 mice per group. Immunofluorescence was performed as previously described32 (link). β-Catenin (BD,610154) and phospho-β-Catenin (Abcam, ab53050) antibodies were used. Slides were counterstained with 4, 6-diamidino-2-phenylindole (DAPI). Images were obtained with a Nikon A1R laser scanning confocal microscope using a 40× APO Fluor objective (NA 0.65).
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4

Immunohistochemical analysis of bone marrow

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The iliac crest bone marrow samples were collected from Balb/c female Lgals3+/+ and Lgals3−/− previously inoculated with 4T1-scramble and 4T1-shRNA-Gal-3 cells, as described previously [23 (link)] and were fixed in 4% PFA for 24 hours. After this period, samples were decalcified in EDTA 20% during 14 days and embedded in paraffin. The double staining performed in the iliac crest bone marrow samples for proliferative nuclear cell antigen (anti-PCNA, DAKO) and cytokeratin-19 (anti-CK-19, Abcam) was performed using a standard immunohistochemistry protocol, where proliferative nuclei were visualized with 3,3′-diaminobenzidine (DAB; Spring Bioscience) staining while cytokeratin-19 was visualized with nitro-blue tetrazolium chloride (NBT) and 5-bromo-4-chloro-3′-indolyphosphate p-toluidine salt (BCIP), according to Silva dos Santos et al. [33 (link)]. Three animals per group were used in two independent experiments. Quantification of positive cells per section was done in 5 different fields.
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5

Multicolor Immunolabeling Protocol

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The following primary antibodies and dyes were used: anti-alpha tubulin (Sigma, T9026, used at 1:10000), anti-Tom20 (Santa Cruz, 11415, used at 1:300), anti-CK19 (Abcam, 52625, used at 1:1000 for IF and 1:100 for IHC), phalloidin-tetramethylrhodamine B isothiocyanate (Sigma, P1951, used at 1:500), DAPI (Sigma, D9542, used at 1:500), and WGA-647 (Molecular probes, W32466, used at 0.1 mg/ml). For immunofluorescence, the following secondary antibodies were used: anti-rabbit FITC (Invitrogen, F2765, used at 1/500), anti-mouse AF405 (Invitrogen, A31553, used at 1/500), and anti-mouse AF647 (Life technologies, A21236, used at 1/500). Tissue sections were mounted in VectaShield containing added DAPI (Vector Laboratories, H-1200).
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6

Isolation and Characterization of Circulating Tumor Cells

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Antibodies used include: anti-CD44 (Cell Signaling Technology, Danvers, MA); anti-DCLK1, anti-CD45, anti-EpCAM, anti-CK19 and anti-GPCR GPR49 (Lgr5) (Abcam, Cambridge, MA); anti-AnxA2 (BD Biosciences, Carlsbad, CA), and anti-β-actin (total) (Sigma, St Louis, MO). Anti-PG antibody was generated in our laboratory as described [27 (link)). Alexa Fluor-594 and Alexa Fluor-488 coupled secondary IgG were from Invitrogen (Carlsbad, CA). Three kits from Stem Cell Technologies were used: 1) RosetteSep™ Human CD45 Depletion Cocktail (#1522), 2) RosetteSep™ Human Circulating Epithelial Tumor Cell Enrichment Cocktail (#15127), and 3) EasySep™ Human Whole Blood CD45 Depletion Kit (#18289), (Vancouver, Canada).
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7

Western Blot Analysis of EMT Markers

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Cells were collected and washed twice with PBS and then lysed on ice for 30 min in RIPA buffer (Beyotime Biotechnology, Shanghai, China) supplemented with protease inhibitor. The protein concentrations of the lysates were determined using a BCA protein assay reagent kit (Beyotime Biotechnology). Approximately 30 μg of total protein lysate was subject to 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and was then transferred to PVDF membranes (Millipore, Billerica, USA) for subsequent incubation with primary antibodies, which was followed by incubation with rabbit and mouse horseradish peroxidase-coupled secondary antibodies for 1 h. Specific bands were detected on automatic chemiluminescence fluorescence gel imaging analysis system (Beijing Sage Creation, Beijing, China). The antibodies used in the study were as follows: anti-ZNF3 (1:1000; Proteintech), anti-TWIST (1:1000; Affinity Biosciences, Nanjing, China), anti-MMP1 (1:1000; Abcam, Cambridge, UK), anti-Vimentin (1:1000; CST, Beverly, USA), anti-E-cadherin (1:1000; CST), anti-N-cadherin (1:1000; CST), anti-CK19 (1:20,000; Abcam), anti-ZEB2 (1:1000; CST), anti-GAPDH (1:10,00; Servicebio, Wuhan, China), anti-rabbit IgG (1:120000; Sigma, St Louis, USA ), and anti-mouse IgG (1:120000; Sigma).
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8

Immunofluorescence analysis of pancreatic cells

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Pancreatic ductal cells were seeded on glass coverslips, fixed in 4% PFA for 15 min, and permeabilized with 1% triton X-100 for 10 min. They were then blocked in 4% BSA for 30 min at room temperature and incubated with primary antibodies (anti-CK19, Abcam, 1:200; PDX 1, Abcam, 1:100, anti-insulin, Abcam, 1:200; anti-glucagon, CST, 1:200) at 4°C overnight. Next, the cells were incubated with secondary antibodies conjugated with FITC or Cy5. The primary antibodies were replaced by PBS using a negative control. Positive cells were observed using a Leica TCS-SP8 SR confocal microscope.
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9

Liver Tumor Analysis in Transgenic Zebrafish

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The GFP-positive embryos were raised to adults and out-crossed to wild-type fish for testing germline transmission. Transgenic fish were dissected to expose the abdominal area and liver morphology observed under the SMZ1600 stereomicroscope (Nikon, Tokyo, Japan). Liver tumor in transgenic fish was defined as GFP-marked liver which was enlarged to at least twice the size of a WT normal liver. Liver samples were then fixed in 4% paraformaldehyde (PFA) for at least 24 hours by dehydration through a series of graded ethanol solutions and embedding in paraffin. Four µm- thick sections were cut and stained with hematoxylin and eosin (H&E) for histological analysis. The following antibodies were used for immunohistochemical study: anti-CK19 (Abcam, Cambridge, UK, ab9221), anti-PCNA (Servicebio, Wuhan, China, GB13010–1), anti-MEK1 (HuaAn, Hangzhou, China, ET1603-20), anti-MEK2 (HuaAn, Hangzhou, China, ET1612-6), anti-ERK (Servicebio, Wuhan, China, GB13003-1), anti-pMEK1/2 (Cell Signaling, Danvers, MA, #9154), anti-pERK (Servicebio, Wuhan, China, GB13004-1).
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10

Isolation and Characterization of Circulating Tumor Cells

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Antibodies used include: anti-CD44 (Cell Signaling Technology, Danvers, MA); anti-DCLK1, anti-CD45, anti-EpCAM, anti-CK19 and anti-GPCR GPR49 (Lgr5) (Abcam, Cambridge, MA); anti-AnxA2 (BD Biosciences, Carlsbad, CA), and anti-β-actin (total) (Sigma, St Louis, MO). Anti-PG antibody was generated in our laboratory as described [27 (link)). Alexa Fluor-594 and Alexa Fluor-488 coupled secondary IgG were from Invitrogen (Carlsbad, CA). Three kits from Stem Cell Technologies were used: 1) RosetteSep™ Human CD45 Depletion Cocktail (#1522), 2) RosetteSep™ Human Circulating Epithelial Tumor Cell Enrichment Cocktail (#15127), and 3) EasySep™ Human Whole Blood CD45 Depletion Kit (#18289), (Vancouver, Canada).
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