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A1r mp system

Manufactured by Nikon
Sourced in Japan, United States

The A1R-MP system is a high-performance confocal laser scanning microscope designed for advanced imaging applications. It features a flexible, modular design that allows for customization to meet the specific needs of researchers and scientists. The A1R-MP system provides high-resolution, real-time imaging capabilities, enabling detailed analysis of biological samples.

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11 protocols using a1r mp system

1

Intravital Imaging of Tumor-Immune Cell Interactions

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The window-chamber mice were anesthetized by inhalation of 1.0–3.0% isoflurane in oxygen flow using a Matrx VMS small animal anesthesia machine (Midmark, Dayton, OH). The window was fixed on a warm plate (Thermo Plate) using a custom-made holder and then fastened to the microscope stage. Intravital images (Qu et al., 2012 (link)) were obtained using an A1R MP+ System (Nikon, Tokyo, Japan) with the large-field imaging function on a motorized stage. The images were captured using a 16× water immersion objective (N.A. 0.8) or 20× objective (N.A. 0.75, Nikon, Japan). Throughout the intravital imaging process, the temperature of the mice was maintained at 37°C with a warm plate. Using large-field imaging technology combined with blood vessel imaging as a ‘position mark’, the same imaging region could be focused on and images of the tumor could be obtained on different days. Confocal laser scanning microscopy (CLSM) was used to simultaneously image the CFP-B16 cells (405 nm laser, 400–500 nm emission), mRFP-Tregs and CMTPX-labeled adoptive CTLs (561 nm laser, 570–620 nm emission), CFSE-labeled adoptive CTLs and Cxcr6-GFP cells (488 nm laser, 500–550 nm emission). For the simultaneous imaging of the CFP-B16 cells and EGFP cells in vivo, multi-photon excitation microscopy was applied with an excitation wavelength of 860 nm.
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2

Visualizing Hypoxia in Skin Interstitial Spaces

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To visually analyze hypoxia within skin interstitial spaces in living animals, we modified an in vivo imaging technique using a phosphorescent hypoxia probe70 (link). Hypoxia probe (LOX-1, SCIVAX, 1 mg/kg), FITC-dextran (150 kDa, Sigma, FD150, 20 mg/kg) and, Hoechst 33342 (10 mg/kg, Invitrogen) were injected into anesthetized mice. The tissue was excited at a wavelength of 920 nm using a Ti: sapphire laser (Vision II, Coherent, Santa Clara, CA), and images were captured using a Nikon A1R-MP system as XYZ-T images. Z stacks were 50 μm thick with 1-μm slice images. A 40x (N.A. 1.15) water immersion objective lens (Nikon) was used, and the images were captured at 1.5x zoom. The phosphorescent intensity was analyzed in randomly selected regions of interest using NIS-Elements software (Nikon) by blinded observers.
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3

Visualizing Vascular Dynamics in Mouse Skin

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To visualize vascular dynamics in the mouse skin, we used in vivo multiphoton microscopy, which was a modification of conventional single photon methods69 (link). Mice were anesthetized by injection with urethane (1.5 g/kg), and they were secured to the heated stage (Tokai Hit, Fujinomiya, Japan) of an inverted microscope (Nikon, Eclipse Ti, Tokyo, Japan). Texas-Red-dextran (D1830, 25 mg/kg BW, 70 kDa, Life technologies) and Hoechst 33342 (H1399, 10 mg/kg, Life technologies) were injected into the mice to visualize cell dynamics and blood flow. The tissue was excited at a wavelength of 860 nm using a Ti: sapphire laser (Visio II, Coherent, Santa Clara, CA, USA), and images were captured using a Nikon A1R-MP system as XYZ-T images. Z stacks were usually approximately 50 μm thick with 1-μm slice images. A 40x (N.A. 1.15) water immersion objective lens (Nikon) was used, and the images were captured at 1.5x zoom. Some sequential images were collected for 1 min at a frame rate of 30 XY images/sec. More than five animals were examined in each group. Images were analyzed using NIS-Elements software (Nikon).
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4

Multi-Modal Characterization of Nanopatterned Surfaces

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Confocal micrographs are acquired by an inverted microscope Eclipse Ti equipped with a confocal A1R-MP system (Nikon), using an Argon ion laser (excitation wavelength, λ = 488 nm). The sample emission is collected by a 60× (oil immersion NA = 1.40, Nikon) objectives and the fluorescence signal is detected by a spectral detection unit equipped with a multi-anode photomultiplier (Nikon).
The AFM characterization of the nanopatterned surfaces is carried out by “peak force” imaging mode in air using a Bruker Dimension Icon system equipped with a Nanoscope V controller. The used silicon tip (nominal radius of curvature of 2 nm) is mounted on silicon nitride cantilever with 0.4 N/m nominal spring constant. SEM is performed with a Nova NanoSEM 450 system (FEI), using an acceleration voltage around 8 kV and an aperture size of 30 mm.
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5

Renal Tubule Cell Morphology Imaging

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After completing flow measurements, immunocytochemistry experiments were performed in order to assess the morphology and growth of renal tubule cells within the device. Staining was carried out directly in the chip, rinsing with PBS, fixing cells grown on the PC membrane by a solution of 4% paraformaldehyde in PBS for 20 min, and washing 3 times with PBS for 5 min each. Cell membranes were permeabilized by incubation with 0.1% (v/v) Triton-X100 in PBS for 10 min, followed by incubation in 1% BSA in PBS for 30 min to reduce nonspecific background staining. For investigating cell morphology, the device was incubated for 40 min with phalloidin-FITC/TRITC (25 µg/mL), washed with PBS and stained with DAPI (3 µg/mL) for 10 min. To visualize the markers AQP2, Na+K+ATPase, before phalloidin and DAPI staining, chips were incubated for 2 h in the primary antibody (anti-AQP2 1:50 in BSA; anti- Na+K+ATPase 1∶50 in BSA), washed with PBS and incubated with the secondary antibody (anti goat-FITC 1∶100 for AQP2 staining; anti mouse–FITC 1∶400 for Na+K+ATPase staining) for 1 h. Finally, the membrane, with cell attached, was taken apart from the device and visualized by inverted microscopy Eclipse Ti equipped by confocal A1 R MP system (Nikon, Melville, NY). Experiments were repeated three times on different devices.
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6

Visualizing Hypoxia in Skin Interstitial Spaces

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To visually analyze hypoxia within skin interstitial spaces in living animals, we modified an in vivo imaging technique using a phosphorescent hypoxia probe70 (link). Hypoxia probe (LOX-1, SCIVAX, 1 mg/kg), FITC-dextran (150 kDa, Sigma, FD150, 20 mg/kg) and, Hoechst 33342 (10 mg/kg, Invitrogen) were injected into anesthetized mice. The tissue was excited at a wavelength of 920 nm using a Ti: sapphire laser (Vision II, Coherent, Santa Clara, CA), and images were captured using a Nikon A1R-MP system as XYZ-T images. Z stacks were 50 μm thick with 1-μm slice images. A 40x (N.A. 1.15) water immersion objective lens (Nikon) was used, and the images were captured at 1.5x zoom. The phosphorescent intensity was analyzed in randomly selected regions of interest using NIS-Elements software (Nikon) by blinded observers.
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7

Visualizing Vascular Dynamics in Mouse Skin

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To visualize vascular dynamics in the mouse skin, we used in vivo multiphoton microscopy, which was a modification of conventional single photon methods69 (link). Mice were anesthetized by injection with urethane (1.5 g/kg), and they were secured to the heated stage (Tokai Hit, Fujinomiya, Japan) of an inverted microscope (Nikon, Eclipse Ti, Tokyo, Japan). Texas-Red-dextran (D1830, 25 mg/kg BW, 70 kDa, Life technologies) and Hoechst 33342 (H1399, 10 mg/kg, Life technologies) were injected into the mice to visualize cell dynamics and blood flow. The tissue was excited at a wavelength of 860 nm using a Ti: sapphire laser (Visio II, Coherent, Santa Clara, CA, USA), and images were captured using a Nikon A1R-MP system as XYZ-T images. Z stacks were usually approximately 50 μm thick with 1-μm slice images. A 40x (N.A. 1.15) water immersion objective lens (Nikon) was used, and the images were captured at 1.5x zoom. Some sequential images were collected for 1 min at a frame rate of 30 XY images/sec. More than five animals were examined in each group. Images were analyzed using NIS-Elements software (Nikon).
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8

Intravital Imaging of Tumor Cell Dynamics

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The mice with window chambers were anesthetized by inhaling 1.0-3.0% isoflurane in oxygen flow through a Matrx VMS small animal anesthesia machine (Midmark, Dayton, OH, USA). The window chamber was fixed on a warm plate (Thermo Plate) using a custom-made holder and then fastened to the microscope stage. Intravital imaging was obtained with the large-field imaging function on a motorized stage using an A1R MP+ System (Nikon, Tokyo, Japan). The images were captured using the 20× objective (N.A. 0.75, Nikon). A confocal laser scanning microscope was used to simultaneously image the CFP-B16 cells (405 nm excitation, 400-500 nm emission), and CXCR6-GFP cells (488 nm excitation, 500-550 nm emission).
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9

Calcium Imaging of Habenula in Larval Zebrafish

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Based on the methods described by (Leung et al., 2019 (link)), non-anesthetized and non-paralyzed larvae were mounted in 2% low melting agarose (LMA), in a glass-bottom dish (Matek). The dish was filled with E3 medium supplemented with 1% Hepes and bubbled continuously with carboxygen (95% oxygen). Imaging was performed with a Nikon A1R MP system, attached to an upright FN1 microscope using a 25 × 1.0 NA water dipping objective. Resonant scanning was performed with 2× averaging, and 20 focal planes were collected, spaced 5 μm apart. Signal was detected with a GaAsP detector. A piezo drive (Mad City Labs) was used for fast focusing during imaging. 21 stacks were collected, at an interval of 1 s, followed by a delay of 1 h. The maximum imaging duration was 29 h. After imaging, larvae were checked for blood flow. They were then released from the agarose. Only data from fish with normal blood flow and active swimming upon release were used for analysis.
To obtain a measure of calcium levels in the whole habenula, fluorescence intensities were summed at each time point using Fiji. The intensity at each hour was averaged and z-scores were plotted as a function of zeitgeber time. Statistical analysis was performed with Prism, by nonlinear regression to a sinewave.
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10

Confocal Microscopy Sublimation Thickness Estimation

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An inverted microscope, Eclipse Ti (Nikon), equipped with a confocal A1R‐MP system (Nikon) was used for the microscopic optical measurements. For the characterization of the light backscattered by the CDD material, a polarized Ar ion laser (wavelength, λ = 488 nm) was used as the light source, while the backscattered signal was collected by a 10 × objective (numerical aperture, N.A. = 0.25) and measured by a photomultiplier. At the beginning of the measurement, the objective is positioned in order to have the focal plane at the surface of the sample (air/sample interface), and this objective position is fixed throughout the overall measurement. Upon sublimation from the sample, the light intensity that is backscattered by the air/sample interface and measured by the detector of the confocal microscope is to decrease because of the increasing spatial gap between the air/sample interface and the fixed focal plane. The sublimated thickness was estimated by the focal depth of the confocal systems: Δz = 2λ/(N.A.)2.[17] The bright field imaging time‐lapse was collected by a DS‐Ri1 color charged‐coupled‐device (CCD) camera (Nikon) in cross‐polarization mode. Analysis was performed by the ImageJ software. QR‐codes were imaged by using either a smartphone camera or a CCD camera (Leica) coupled to a long working‐distance optical system (MVL7000, Thorlabs).
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