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10 protocols using β catenin

1

Quantifying Protein Expression with Western Blots

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Western blots were performed to measure the expression levels of proteins [20 (link)].
Total protein was extracted using RIPA buffer, and cytoplasmic and nuclear fractions were separated with a cytoplasmic and nuclear protein extraction kit (Solarbio). SDS-PAGE was applied to separate proteins of different sizes, and the proteins were transferred onto PVDF membranes. Skim milk was used to block the nonspecific antigens, and then the membrane carrying proteins was incubated with antibodies against following proteins: UBAP2L (1:1000; Affinity, Changzhou, China), cyclin D1 (1:1000; Abclonal, Wuhan, China), AXIN2 (1:1000; Affinity), c-MYC (1:1000; Affinity), β-catenin (1:1000; Abclonal), GAPDH (1:10,000; Proteintech, Wuhan, China) or histone H3 (1:5000; GeneTex, Irvine, USA). After rinsing the membrane to remove unbound primary antibodies, the membrane was incubated with a secondary antibody conjugated with HRP (1:3000; Solarbio) for 1 h at 37°C. Subsequently, the protein reacted with ECL reagents, and signal exposure was carried out in the dark. GAPDH served as the cellular or cytoplasmic internal control, and histone H3 as the nuclear internal control.
The primer information was shown in Table 1.
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2

Chondrosarcoma Cell Culture Protocol

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SW1353 chondrosarcoma cell line (Cell Bank of Chinese Academy of Sciences; Shanghai, China) was cultured with Dulbeccoʼs modified Eagleʼs medium (DMEM) containing 1% double antibody and 10% fetal bovine serum (FBS) (Gibco; USA) in a cell incubator with 5% CO2 at 37°C. The complete DMEM was replaced every other day. SA (Sigma-Aldrich; Shanghai, China) was dissolved with dimethyl sulfoxide (Solarbio; Beijing, China). Rabbit polyclonal antibodies against Bax, Bcl-2, WNT3A, β-Catenin, c-Myc, and GAPDH were obtained from ABclonal Technology (Shanghai, China). Rabbit monoclonal antibodies against N-cadherin and E-cadherin were acquired from cell signaling technology (USA). Other reagents were purchased from Sigma-Aldrich (Shanghai, China) unless additional described.
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3

Antibody Optimization for Western Blot

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Antibodies for western blot analyses and the final working dilutions were as follows: rabbit polyclonal antibodies to α-SMA (dilution 1 : 1000; ABclonal, MA, USA), β-catenin (dilution 1 : 1000; ABclonal, MA, USA), vimentin (dilution 1 : 500; Santa Cruz, TX, USA), N-cadherin (dilution 1 : 1000; ABclonal, MA, USA), E-cadherin (dilution 1 : 1000; ABclonal, MA, USA), Wnt-3 (dilution 1 : 1000; ABclonal, MA, USA), p-GSK3β (dilution 1 : 1000; ABclonal, MA, USA), GSK3β (dilution 1 : 1000; ABclonal, MA, USA), β-actin (dilution 1 : 1000, Santa Cruz, TX, USA).
p65 (dilution 1 : 1000; GeneTex, CA, USA), and fibrillin (dilution 1 : 1000, ABclonal, MA, USA). All HRP-conjugated secondary antibodies were purchased from Jackson ImmunoResearch Inc. (PA, USA).
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4

Western Blot Analysis of Wnt Signaling Pathway

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Cells were lysed in cold RIPA buffer containing phosphatase and protease inhibitor, then centrifuged at 13000 ​g at 4 ​°C for 15 ​min. The total protein concentration was then determined with a Bicinchoninic Acid (BCA) kit (Solelybio, Beijing, China). The equivalent quantity of protein (30 ​μg) in each group was separated by 10–12% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene difluoride (PVDF) membrane (Millipore, MA, USA). After blocking with 5% skimmed milk, membranes were probed with primary antibodies against Phospho-β-catenin (Ser552) (CST, MA, USA), β-catenin (ABclonal, Wuhan, China), Axin2 (A17021, ABclonal, Wuhan, China), Cyclin D1 (CST, MA, USA), AMPKα (CST, MA, USA), Phospho-AMPKα (Thr172) (CST, MA, USA), β-Actin (ABclonal, Wuhan, China) overnight at 4 ​°C. Horseradish peroxidase-conjugated anti-mouse or anti-rabbit IgG (Abcam, MA, USA) was used as secondary antibodies. Enhanced Chemiluminescence (ECL, Thermo Fisher Scientific, MA, USA) detection system was used to detect the protein bands on the membrane. The intensity of the protein bands was analyzed by Image J software, using β-Actin as reference protein.
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5

Molecular Mechanisms of Cell Differentiation

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The reagents used for cell treatment were Lipofectamine 3000 (L3000015, Invitrogen), ascorbic acid (A4544, Sigma-Aldrich), sodium β-glycerophosphate (G9422, Sigma-Aldrich), and dexamethasone (D4902, Sigma-Aldrich). Primary antibodies included PER2 (NBP2-24616, Novus Biologicals), BMAL1 (NB100-2288, Novus Biologicals), PPARγ (A0270, ABclonal Technology, China), AKT1-Ser473 (AP0140, ABclonal Technology, China), β-catenin-Ser552 (AP0579, ABclonal Technology, China), AKT1 (A11016, ABclonal Technology, China), AMELX (ab153915, Abcam), β-catenin (A11343, ABclonal Technology, China), LAMIN B1 (A1910, ABclonal Technology, China), β-tubulin (PMK081M, BioPM, China), GAPDH (PMK042M, BioPM, China), CK14 (MA5-11599, ThermoFisher Scientific), F-actin (ab205, Abcam), and E-cadherin (sc-8426, Santa Cruz).
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6

Western Blot Protein Analysis Protocol

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Proteins were extracted from the lysed cells with a Mem-PER Plus membrane protein extraction kit (Thermo Fisher Scientific, catalog no. 89842). Trans-Blot Turbo (Bio-Rad) was used to transfer proteins from 8% sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) gel to a polyvinylidene difluoride Western blot membrane. The transferred membrane was incubated with 3% BSA and then with the primary antibodies at 4 °C overnight, including phospho-β-catenin-Ser675 (ABclonal, catalog no. AP0795), phospho-myosin light chain 2 (Ser19) (Cell Signaling, catalog no.3671), β-catenin (ABclonal, catalog no. A0316), tubulin (Abcam, catalog no. ab7291), APC (Abcam, catalog no. ab40778), Oct4 (Abcam, catalog no. ab181557), and Bmi1 (Abcam, catalog no. ab126783). The membrane was washed and incubated with the secondary antibodies, goat anti-mouse IgG (H+L)-HRP (horseradish peroxidase) conjugate and goat anti-rabbit IgG (H+L)-HRP conjugate (Bio-Rad, catalog no. 1706516), for 2 h. GAPDH (Abcam) was used for reference. The membranes were then incubated with Clarity and Clarity Max Western ECL Blotting Substrates (Thermo Fisher Scientific). Images were captured using the ChemiDoc Imaging system (Thermo Fisher Scientific).
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7

Evaluation of NF-κB p65 and β-catenin Pathways in HFLS-RA Cells

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HFLS-RA cells were cultured overnight in a 6-well plate with complete medium. Then, the cells were incubated with XF (3, 4, 5 mg/mL) for 24 hours. Finally, RIPA buffer containing protease inhibitor phenylmethanesulfonyl fluoride (Beyotime, Shanghai, China) was used to lyse the cells, and centrifuged and the supernatant was collected. The protein concentration of the supernatant was detected by a BCA Protein Assay Kit (Beyotime, Shanghai, China). The appropriate protein concentration was adjusted with the lysate, and mixed with the loading buffer, equal concentrations of proteins were separated by SDS-PAGE and electro-transferred to a nitrocellulose membrane (NC, Beyotime, Shanghai, China, FFN08). The latter NC membranes were blocked with 5% nonfat milk for 1 hour with shaking. Then, the membranes were incubated with primary antibodies including NF-κB p65 (ABclonal, Wuhan, China, A10609), β-catenin (ABclonal, Wuhan, China, A11512) and GAPDH (ABclonal, Wuhan, China, AC001) overnight at 4 °C. The NC membranes were rinsed with TBST thrice and incubated with secondary antibodies for 1h at room temperature. The expression of GAPDH was used for normalizing the proteins expressions of different groups. Bands were detected using a 2-color infrared laser imaging system (Odyssey Clx Image Studio 3.1). The experiments were repeated 3 times.
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8

Immunohistochemical Analysis of Mouse Tumor Tissues

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Mouse tumour tissues were fixed with 4% paraformaldehyde for 24 h and embedded in paraffin. Sections (5 μm-thick) were prepared and blocked with Immunol Staining Blocking Buffer (P0102; Beyotime) and 5% goat serum (C0265; Beyotime) followed by incubation with primary antibodies against VIM (cat. no. 5741; Cell Signaling Technology), E-cadherin (cat. no. A3044; ABclonal), β-catenin (cat. no. 8480; Cell Signaling Technology) and c-Myc (cat. no. ab32072; Abcam) at 4 °C overnight. These sections were then washed and incubated with the mouse/rabbit streptomycin-biotin assay system (SP-9000; ZSGB-BIO, Beijing, China). Expression of vimentin and E-cadherin were visualised by 3,3′-diaminobenzidine tetrahydrochloride (ZLI-9017; ZSGB-BIO) staining. At least four random fields were examined for each sample. Images were captured using a microscope (IX73, Olympus).
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9

Osteoblast Protein Expression Analysis

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Cellular protein of osteoblasts from rats was extracted with RIPA lysis buffer (#P0013B, Beyotime, China), and BCA kit (#P0012S, Beyotime, China) was adopted to determine the protein concentration. Subsequently, the SDS-PAGE gels were prepared according to the SDS-PAGE kit (#PG112, Epizyme, China). The electrophoresis condition was set at 80 V for 1 h and then was adjusted to 120 V for 40 min. The membrane transfer condition was settled at 250 mA for 2 h. Then, 5% skimmed milk was used for blocking at 25°C for 1 h. Primary antibodies PTGS2 (#A1253, ABclonal, China), β-catenin (#A19657, ABclonal, China), TCF4 (#A1141, ABclonal, China), ALP (#A19286, ABclonal, China), and GAPDH (#A19056, ABclonal, China) (dilutions of 1 : 1000, 1 : 500, 1 : 500, 1 : 500, and 1 : 100, respectively) were added for incubation overnight at 4°C. The membranes were washed 3 times with TBST, 10 min each time. Next, secondary antibody (#AS014, ABclonal, China) was added to the membranes and incubated at room temperature for 1 h. Then, the membranes were rinsed with TBST 3 times, 10 min each time, and exposed using ECL exposure liquid. The gray values of the target bands were analyzed and calculated by ImageJ (version 1.8.0, USA).
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10

Investigating Protein Interactions

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Co-immunoprecipitation (Co-IP) and immunoprecipitation (IP) were conducted using the IP/Co-IP kit (ABsin) according to the manufacturer's instructions. The primary anti-bodies used in this assay included β-catenin (ABclonal), YWHAZ (Proteintech), Ubiquitin (CST), β-tubulin (ABclonal).
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