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8 protocols using chitinase from streptomyces griseus

1

Chitinase Inhibits Verticillium dahliae Growth

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The wells of a microtitre plate were filled with 200 μl of potato dextrose broth (PDB) at pH 6.85 containing 0.2 U of chitinase from Streptomyces griseus (catalog no. C6137, Sigma-Aldrich) that had been resuspended in the buffer (50 mM potassium phosphate, pH 6.0). The controls were carried out by adding the buffer instead of the chitinase solutions. A final concentration of 106/ml spores of V. dahliae WT, Δvdcp1 and Δvdcp1-Res strains was added into PDB, and 68 μg/ml of resazurin dye (catalog no. R7017, Sigma-Aldrich) was added to each well to measure fungal growth. Resazurin is reduced from blue to light pink color in presence of actively growing cells. The plates were incubated at 25°C in the dark, and the absorbance was measured at 578 nm at the indicated times. V. dahliae growth inhibition. The percentage of V. dahliae growth inhibition was calculated as 100 minus the percentage of the ratio between net absorbance values of each sample and net absorbance of the medium with the resazurin dye but without V. dahliae (Sella et al., 2014 (link); Quarantin et al., 2016 (link)).
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2

Chitin Azure Assay for Ft Enzymes

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Independent chitin azure assays were prepared by adding 10 mg of chitin azure (Sigma, St. Louis, MO, USA) to 750 μL of 200 mM sodium phosphate buffer, pH 7.0, followed by one of the following: 94 μg of recombinant FTL1793; 94 µg of recombinant FopA (negative control Ft outer membrane protein; [45 (link)]); 200 U of purified chitinase from Streptomyces griseus (Sigma, St. Louis, MO, USA); or buffer alone (buffer control). Recombinant FopA was prepared as previously described [45 (link)]. Enzyme assays were prepared in triplicates and incubated end-over-end at 37 °C. Enzyme activity was assessed every 24 h for 30 d, with samples being centrifuged at 7000× g for 10 min, and the supernatant absorbance at 570 nm being measured. After absorbance measurements were recorded, samples were resuspended and returned to the incubated carousel for further analysis.
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3

Optimized Technique for Intracellular Metabolic Imaging

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2-Deoxy-D-Glucose (Sigma-Aldrich, D8375-5G), Sodium Azide (Sigma Aldrich, S8032-25G), DiD solid (Life Technologie, D7757), Leibovitz’s L-15 medium (Life Technologies, 11415–064), Chitinase from Streptomyces Griseus (Sigma, C6137-25 UN), Fetal Bovine Serum (Invitrogen, 16140–063), Penicillin-Streptomycin (Sigma Aldrich, P4333-100ML), Peanut Lectin (Sigma Aldrich, L0881-10MG), Vectashield mounting medium (Vector Laboratories, H-1000), Triazol reagent (Invitrogen, 15596–026), High capacity RNA-to-cDNA Kit (Applied Biosystem, 43874006), Taqman Universal Master Mix II (Applied Biosystem, 4440043),Taqman probe Ce02485188_m1 (Life Technologies, 4448802), Taqman probe Ce02502871_g1 (Life Technologies, 4448892) Taqman probe Ce02502865_g1 (Life Technologies, 4448892) H2-DCFDA (Sigma-Aldrich, 35845-1G).
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4

Intracellular Trehalose and Chitin Quantification

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Intracellular trehalose level was determined as previously described [51 (link)]. For accurate chitin determination in the yeast cell wall, an enzyme assay has been used as follows. Lyophilized cell walls (about 10 mg) were suspended in 200 μl of 50 mM potassium acetate buffer, pH 5.0 and boiled at 65°C for 5 min. After mixing and cooling to ambient temperature, the cell wall suspension was treated with 1U of chitinase from Streptomyces griseus (Sigma-Aldrich, France) for 24 h at 37°C. The N-acetyl glucosamine released by the chitinase action was then determined using a colorimetric method as described by Reissig et al. [52 (link)] and adapted for a micro method. Briefly, 125 μl of the enzymatic mixture was heated with 25 μl of 0.8 M potassium tetraborate pH 9.0 at 100°C for 8 minutes. After cooling at room temperature, 750 μl of Reissig reagent (10 g of 4-dimethylaminobenzaydedyde dissolve in 12.5 mL 10 N HCl and 87.5 mL of glacial acetic acid) diluted ten times in deionized water was added, and the tubes were incubated 40 minutes at 37°C. The absorbance was read at 585 nm. The chitin content was obtained from N-acetylglucosamine standard curve (from 0 to 100 μg/mL) made in the same condition.
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5

Egg Suspension Treatment Protocol

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Eggs were suspended in egg buffer (118 mM NaCl, 48 mM KCl, 2 mM CaCl2, 2 mM MgCl2, 25 mM HEPES, pH 7.3) before applying shell treatments45 . Untreated eggs were taken directly from this suspension. Bleach treatment was performed in a 0.27 M NaOH + 2% NaOCl solution (bleach) for 2 or 5 min, respectively. Egg samples were then washed three times by repeated centrifugation (1680 rcf for 60 s) and resuspended in egg buffer by vortexing. Chitinase-treated shells were obtained by suspending 2-min bleach-treated eggs in egg buffer containing 5 mg mL−1 Chitinase from Streptomyces griseus (Sigma-Aldrich, Buchs, Switzerland) until the start of the experiments (i.e., for ∼15 min).
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6

Chitin Quantification of Insect Samples

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Samples of R. prolixus first instar nymphs and adult males; adult males and females of L. longipalpis; and adult males and females of A. aegypti were prepared (see item “Preparation of Samples” for details). Aliquots of 70 μL were separated and combined with 70 μL of 1 mg/mL chitinase from Streptomyces griseus (C6137, Sigma) in 50 mM potassium phosphate, pH 6.0, 20 mM sodium azide. Control groups consisted of tubes containing samples and 70 μL of the same buffer. Samples were incubated at 37°C for 18 h, then filled to 350 μL with distilled water and aliquots were taken for chitin content determination following both protocols.
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7

Shrimp Chitin Extraction and Chitinase Purification

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Chitin was extracted from shrimp shells (Cat. #C7170) and chitinase from Streptomyces griseus (Cat. #C6137) were purchased from Sigma–Aldrich. (St Louis, MO, USA). All the chemical reagents used in this study were obtained from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). All reagents used were of analytical grade, unless otherwise specified.
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8

Chromatography-based Protein Purification

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Materials for chromatography have been described elsewhere [10 (link)]. All other reagents and chemicals were of analytical grade (Merck Life Science S.r.l., Milan, Italy). Nuclease-treated rabbit reticulocyte lysate system was purchased from Promega (Madison, WI, USA). Chitinase from Streptomyces griseus (product number Sae0158) was purchased from Sigma-Aldrich solutions (Merck Life Science S.r.l.).
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