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11 protocols using sybr green fast qpcr mix

1

Myocardial Gene Expression Analysis

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The total RNA of the myocardium was extracted from the myocardium using a Trizol separation reagent. The cDNA was then synthesized by the Prime Script™ RT Master Mix Kit (Takara, Kyoto, Japan) before quantitative real-time PCR were performed using the SYBR Green Fast qPCR mix (Takara) with the ABI StepOne PCR System (ABI, Carlsbad, CA, USA). All primers used were the following: atrial natriuretic peptide- (ANP-) F 5′-GAGAAGATGCCGGTAGAAGA-3′, ANP-R 5′-AAGCACTGCCGTCTCTCAGA-3′; brain natriuretic peptide (BNP-F), 5′-CTGCTGGAGCTGATAAGAGA-3′, BNP-R 5′-TGCCCAAAGCAGCTTGAGAT-3′; CaMKIIδA-F 5′-CGAGAAATTTTTCAGCAGCC-3′, CaMKIIδA-R 5′-ACAGTAGTTTGGGGCTCCAG-3′; CaMKIIδB-F 5′-CGAGAAATTTTTCAGCAGCC-3′, CaMKIIδB-R 5′-GCTCTCAGTTGACTCCATCATC-3′; CaMKIIδC-F 5′-CGAGAAATTTTTCAGCAGCC-3, CaMKIIδC-R 5′-CTCAGTTGACTCCTTTACCCC-3′; 18S-F 5′-AGTCCCTGCCCTTTGTACACA-3′, 18S-R 5′-CGATCCGAGGGCCTCACTA-3′. Experimental cycle threshold values were normalized to 18S, a housekeeping gene, and relative mRNA expression was calculated versus a control sample.
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2

PPARG Expression in Granulosa Cells

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RNA was extracted from patients’ GCs and reverse-transcribed into cDNA. Then, the expression of PPARG and its SV was immediately evaluated by PCR. qRT–PCR was carried out using SYBR Green Fast qPCR Mix (code No. RR420, TaKaRa, Dalian, China) under standard conditions (95 °C for 30 s and 40 cycles of 95 °C for 5 s and 60 °C for 34 s) on a QuantStudio 7 Flex instrument (Applied Biosystems, Foster City, CA, USA). The expression of the genes of interest was normalized to that of beta-actin and quantified according to the 2−ΔΔCT) method. The mRNA expression of PPARG and its SV was compared between the two groups using the Mann–Whitney U test and Student’s t test, respectively. The reactions were carried out in duplicate. The primer sequences are also given in Table S1.
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3

Ovarian Tissue RNA Extraction and qPCR

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Total RNA was extracted from ovarian tissues and GCs using RNA-Trizol reagent (Invitrogen, Carlsbad, CA, USA). The RNA concentration of all samples was quantified by NanoDrop 1000 (Thermo Fisher Scientific, USA), and was reverse transcribed to cDNA by Reverse Transciption kit (Takara, Dalian, China). Quantitative reverse transcription PCR (RT-PCR) was performed in SYBR Green® fast qPCR Mix (Takara, Dalian, China) on an ABI 7500 Real-Time PCR System (Applied Biosystems, Foster City, CA USA). Results were normalized using β-actin expression. Primers were designed using Primer-Blast tool by NCBI and present in Supplementary Table 1. Relative transcription levels were calculated using 2-ΔΔCT methods.
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4

RNA Extraction and Quantitative PCR

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Total RNA was extracted from cells or tissues using the RNAiso reagent (TaKaRa, Dalian, China) and reverse-transcribed by applying the PrimeScript RT Reagent Kit with gDNA Eraser (TaKaRa). Quantitative real-time PCR assays were carried out using SYBR Green Fast qPCR Mix (TaKaRa). The primer sequences used in this study are listed in Table S3.
For the mRNA decay analyses, htNSCs knocked down with shRNA lentivirus were directly harvested or treated with actinomycin D (Sigma–Aldrich) and then harvested at 30, 60, 90, and 120 min. Total RNA extraction and qPCR were conducted as described above, and 28S rRNA was used as a reference control in the mRNA decay assay.
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5

Myocardial Total RNA Extraction and qPCR Analysis

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The total RNA of myocardium was extracted by Trizol separation reagent according to the reagent instructions. RNA sample was subjected to reverse transcription with the following procedure: 37°C 15 min, 85°C 5 s, and 4°C forever. The cDNAs were amplified with SYBR Green Fast qPCR mix (Takara, Otsu, Shiga, Japan) using ABI StepOne PCR System (ABI, Carlsbad, CA, USA). 18S was serviced as the house-keep gene. The average cycle threshold (CT) values from triplicate experiments were normalized to 18S, and the group of WT + NS was served as control samples. Relative mRNA expressions were calculated as the fold of control samples. The structures of all primers used are listed in Table 1.
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6

Quantitative RNA Expression Analysis

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Total RNA was extracted from A549 cells using Trizol reagent (Invitrogen Corporation, CA, USA) followed by reverse transcription using a PrimeScript™ RT MasterMix Kit (Takara, Shiga, Japan). Real-time PCR was performed with the above cDNA using SYBR Green Fast qPCR mix (Takara) with an iCyler iQ Real-time PCR Detection System (Bio-Rad Laboratories Inc., USA). 18S was used as a housekeeping gene. Experimental cycle threshold values were normalized to 18S, and relative mRNA expression was calculated versus a control sample (the primers used are listed in Table 1).
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7

Analyzing Gene Expression in Cardiac Tissues

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Total RNA from the frozen heart tissues or primary cardiomyocytes was extracted using the TRIzol Reagent (Invitrogen Life Technologies, USA). Subsequently, the RNA was reverse transcribed to cDNA using a PrimeScript™ RT Master Mix Kit (Takara). Quantitative real-time PCR was performed using a SYBR Green Fast qPCR mix (Takara) with the ABI 7500 Real-Time PCR System (ABI, Carlsbad, CA, USA). The expression levels of the target genes were normalized to that of GAPDH. The primer sequences used in this procedure are listed in Supplementary Table S1 and S2.
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8

Quantitative Analysis of Cardiac Gene Expression

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Total RNA was extracted from myocardial tissue using Trizol reagent (Takara, Kyoto, Japan), and then the purified RNA was reversely transcribed into cDNA using PrimeScript™ RT Master Mix Kit (Takara, Kyoto, Japan). SYBR Green Fast qPCR mix (Takara, Kyoto, Japan) and ABI 7500 real-time PCR system (ABI, Carlsbad, CA, USA) were used to perform qRT-PCR. All primers used were as follows: atrial natriuretic peptide (ANP)-F 5′-GAGAAGATGCCGGTAGAAGA-3′, ANP-R 5′-GAGAAGATGCCGGTAGAAGA-3′, brain natriuretic peptide (BNP)-F, 5′-CTGCTGGAGCTGATAAGAGA-3′, BNP-R 5′-TGCC CAAAGCAGCTTGAGAT-3′; CaMKIIδ A-F 5′-CGAGAAATTTTTCAGCAGCC-3′, CaMKIIδ A-R 5′-ACAGTAGTTTGGGGCTCCAG-3′; CaMKIIδ B-F 5′-CGAGAAATTTTTCAGCAGCC-3′, CaMKIIδ B-R 5′-GCTCTCAGTTGACTCCATCATC-3′; CaMKIIδ C-F 5′-CGAGAAATTTTTCAGCAGCC-3, CaMKIIδ C-R 5′-CTCAGTTGACTCCTTTACCCC-3′; 18S-F 5′-AGTCCCTGCCCTTTGTACACA-3′, 18S-R 5′-CGATCCGAGGGCCTCACTA-3′. 18S was used as a housekeeping gene. Each experiment was performed in triplicate. The relative expressions of target genes were calculated with the 2−∆∆Ct method.
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9

Myocardial Gene Expression Analysis

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The total RNA of the myocardium was extracted from the myocardium using a Trizol separation reagent. The cDNA was then synthesized by the Prime Script™ RT Master Mix Kit (Takara, Kyoto, Japan) before quantitative real-time PCR was performed using the SYBR Green Fast qPCR mix (Takara) with the ABI StepOne PCR System (ABI, Carlsbad, CA, USA). All primers used were the following: atrial natriuretic peptide (ANP)—F 5′-GAGAAGATGCCGGTAGAAGA-3′; ANP—R 5′-AAGCACTGCCGTCTCTCAGA-3′; brain natriuretic peptide (BNP)—F 5′-CTGCTGGAGCTGATAAGAGA-3′; BNP—R 5′-TGCCCAAAGCAGCTTGAGAT-3′; CaMKII δA—F 5′-CGAGAAATTTTTCAGCAGCC-3′; CaMKII δA—R 5′-ACAGTAGTTTGGGGCTCCAG-3′; CaMKII δB—F 5′-CGAGAAATTTTTCAGCAGCC-3′; CaMKII δB—R 5′-GCTCTCAGTTGACTCCATCATC-3′; CaMKII δC—F 5′-CGAGAAATTTTTCAGCAGCC-3′; CaMKII δC—R 5′-CTCAGTTGACTCCTTTACCCC-3′; 18S—F 5′-AGTCCCTGCCCTTTGTACACA-3′, 18S—R 5′-CGATCCGAGGGCCTCACTA-3′.
We normalized the experimental period threshold to 18S, a housekeeping gene, and calculated relative mRNA expression relative to control samples.
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10

Myocardial Total RNA Extraction and qRT-PCR

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Total RNA was extracted from myocardial tissue using Trizol reagent (Takara, Kyoto, Japan), and then the purified RNA was reversely transcribed into cDNA using PrimeScript™ RT Master Mix Kit (Takara). SYBR Green Fast qPCR mix (Takara) and ABI 7500 real-time PCR system (ABI, Carlsbad, CA, United States) were used to perform Quantitative Real-Time Polymerase Chain Reaction (qRT-PCR). 18S was used as a housekeeping gene. Each experiment was performed in triplicate. The relative expressions of target genes were calculated using the 2–ΔΔCt method.
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