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6 protocols using imagequant tl 1d

1

Western Blot Analysis of Signaling Proteins

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Protein (50 mg per sample) was loaded per line and separated on 8%–15% tris-glycine polyacrylamide gels and transferred to nitrocellulose membranes. Immunoblots were blocked for 2 h in Tris-buffered saline Tween-20 (TBST, 20 mM Tris-HCl, 150 mM NaCl, pH 7.5, and 0.05% Tween 20) containing 5% skim milk. The blots were then incubated with primary antibodies in TBST at 4°C overnight. Membranes were washed three times with TBST and then incubated with secondary antibody for 2 h at room temperature. Membranes were washed again and developed with enhanced chemiluminescence (ECL) and detected with X-ray films. The blots were visualized with ImageQuant TL 1D (GE Healthcare, USA). Primary antibodies used from Cell Signaling Technologies (Danvers, MA, USA) were as follows: p-Tyr452 Gab2 (#3882, 1 : 1000), PI3 kinase p85 (#4257, 1 : 1000), Akt (#9272, 1 : 1000), p-Ser473Akt (#4058, 1 : 1000), p-Ser9GSK3β (#9323, 1 : 1000), and beta-actin (#3700T, 1 : 2000). Primary antibody directed against Grb2 (Abcam PLC, Cambridge, UK, #ab32111, 1 : 1000), GSK3β (Abcam PLC, Cambridge, UK, #ab131356, 1 : 1000), and Gab2 (Santa Cruz, USA, sc-365590, 1 : 500) were also used in the experiments. Secondary antibodies were goat anti-rabbit (BA1054, 1 : 2000) (Boster Biological Technology Co. Itd, Wuhan, China) or anti-mouse (BA1050, 1 : 2000).
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2

Northern Blot for Reporter and Control RNA Detection

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The cells were harvested in peqGOLD TriFast reagent (VWR) and total RNA extraction was performed as recommended by the manufacturer’s protocol. 2.5 µg of total RNA were resolved on a 1% agarose/0.4 M formaldehyde gel using the tricine/triethanolamine buffer system as described15 (link) followed by transfer on a nylon membrane (Roth) in 10x SSC. The blots were incubated overnight at 65 °C in Church buffer containing [α-32P]-GTP body-labeled RNA probes for detection of the reporter and lacZ control RNA. Endogenous 7SL RNA was detected by a 5′-32P-labeled oligonucleotide (5′-TGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTT-3′). The blots were visualized and quantified using the Typhoon FLA 7000 (GE Healthcare) and ImageQuant TL 1D software.
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3

Quantifying Nucleocapsids: BVs and ODVs

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To administer an equal number of nucleocapsids of BVs and ODVs, we quantified the two different virions based on the relative amount of VP39. The quantification was performed by comparing the VP39 capsid mass through VP39 intensity in Western blot assays revealed by the monoclonal antibody to VP39. Images were digitalized and analyzed with Image Quant TL 1D software (GE, Healthcare). Additionally, polyhedra were counted in a Neubauer chamber and the content of VP39 was evaluated after dissolving polyhedra with 0.1 M sodium carbonate to release embedded ODVs.
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4

Investigating MAPK Pathway Regulation in Cancer Cells

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TE1 and KYSE150 cells were seeded on a 3.5-cm dish, treated with GPX at various concentrations and times, and lysed in RIPA buffer. Proteins were separated on SDS polyacrylamide gels and transferred to PVDF membranes (Millipore, Billerica, MA, USA). The membranes were blocked and immunoblotted with primary antibodies at 4°C overnight, followed by appropriate secondary antibodies. GAPDH was used as the loading control. Membranes were visualized under Image Quant LAS 4000 mini and processed by Image Quant TL 1D software (General Electric Company).
For transfected cells, 3 × 105 KYSE150 cells were seeded in 6-well plate. After 24 h, they were transfected with 2 μg plasmid and changed medium 6 h later. p-ERK and ERK protein level were detected 24 h and 48 h later.
The primary antibodies C-RAF (Cat.9422), MEK1/2 (Cat.9122), p-MEK (Ser217/221, Cat.9154), ERK (Cat.4695), p-ERK (Tyr202/Tyr204, Cat.4370), GAPDH (Cat.5174), p-AKT (Ser473, Cat.9171), cyclinB1 (Cat.12231), E-cadherin (Cat.3195), vimentin (Cat.5741), and snail (Cat.3879) were purchased from Cell Signaling Technologies (Danvers, MA, USA). RAS (Cat.ab137739) and B-RAF (Cat.ab33899) were purchased from Abcam (Cambridge, UK).
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5

Quantitative Protein Analysis of Myosin

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Myosin samples were separated using a small format 15% SDS-PAGE gel with an acrylamide/bisacrylamide ratio of 37.5:1 (ROTIPHORESE Gel 30, 3029.1; Roth). Proteins were stained using Imperial Protein Stain (Thermo Fisher Scientific); and subsequent densitometric analysis was carried out using an argus X1 gel documentation system (version 7.14.22; Biostep). Images were recorded as 16-bit grayscale .TIFF images; and proteins were quantified using Image Quant TL 1D (v.8.2.0.0; GE) software.
Western blot analyses of MLC isoforms were performed after separation of proteins on a small format 12.5% SDS-PAGE gel. For analysis of total protein, the nitrocellulose blotting membrane was stained with SYPRO Ruby protein gel stain (Invitrogen) prior to immunolabeling. Atrial and ventricular essential light chains MLC1a and MLC1s/v were immunolabeled using anti-MYL4 (PA5-49205; Thermo Fisher Scientific). The atrial RLC (MLC2a) was labeled with an MLC2a-specific antibody (311011; Synaptic Systems GmbH).
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6

RNA Extraction and Northern Blot Analysis

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The cells were harvested in peqGOLD TriFast reagent (VWR) and total RNA extraction was performed as recommended by the manufacturer's protocol. 2.5 μg of total RNA were resolved on a 1% agarose/0.4 M formaldehyde gel using the tricine/triethanolamine buffer system (67 (link)) followed by a transfer on a nylon membrane (Roth) in 10× SSC. The blots were incubated overnight at 65°C in Church buffer containing [α-32P]-GTP body-labeled RNA probes for detection of the reporter mRNA. Endogenous 7SL RNA was detected by a 5′-32P-labeled oligonucleotide (5′-TGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTT-3′). The blots were visualized and quantified using a Typhoon FLA 7000 (GE Healthcare) and ImageQuant TL 1D software.
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