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Trizol assay

Manufactured by Thermo Fisher Scientific
Sourced in United States

TRIzol is a ready-to-use reagent for the isolation of total RNA from cells and tissues. It is a mixture of guanidine isothiocyanate and phenol in a mono-phasic solution, which effectively dissolves DNA and RNA, while maintaining their integrity. TRIzol can be used to extract RNA from a variety of sample types, including animal tissues, cell cultures, and bacteria.

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7 protocols using trizol assay

1

Gene Expression Analysis of Muscle and Cell Lines

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Total RNA of gastrocnemius muscles was obtained by TRIzol assay (Thermo Fisher Scientific Inc., Waltham, MA, USA). Total RNA of C3H10 ​cells was collected by using TRIzol assay (Takara Bio Inc.) The total RNA was used to prepare complementary DNA by using reverse transcriptase kits (RR036A, Takara Bio Inc., Kusatsu, Japan) according to the manufacturer's instructions. The relative gene expression of Ubc, ALP, OCN, RAGE, STAT1, RUNX2 and Col1a1 were analyzed by using SYBR Green real-time PCR kits (SYBR® Premix Ex Taq™ II, RR820A; Takara Bio Inc.) and ABI 7500 Fast Real-Time PCR system (Applied Biosystems Life Technologies, Foster City, CA, USA). Expression of the relative gene was further normalized to that of GAPDH. Relative gene expression was quantified using the comparative threshold cycle (2−ΔΔCt) calculation. The PCR reaction conditions were set as: 95 ​°C for 30 ​s, followed by 40 cycles of 95 ​°C for 5 ​s, and 60 ​°C for 34 ​s. Supplementary Table S2 shows the synthesized real-time PCR primers.
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2

Quantifying BDNF-AS Expression in NSCLC

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RNA extraction was performed using a Trizol assay (Thermo Fisher Scientific, USA) according to the manufacturer's recommendation. Complementary DNA sequences were then reversely transcribed from RNA products using a TaqMan Reverse Transcription Kit (Applied Biosystems, USA). A Brilliant SYBR Green II qRT-PCR kit (Stratagene, USA) was performed on an ABI automated 7900 HT Fast Real-Time PCR System (Applied Biosystems) to probe the gene expression of natural antisense BDNF-AS in both NSCLC clinical samples and NSCLC cell lines. Relative gene expression levels of BDNF-AS were then normalized to the gene expression level of house keeping gene of U6 small nuclear RNA (U6 sRNA) in control samples using the 2 -ΔΔCt algorithms.
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3

Quantification of Nrf2, Bcl-2, Bax, and Caspase-3 Expression

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Total RNA was isolated with TRIzol assay (Invitrogen, Pleasanton, CA) following the manufacturer’s protocols. Isolated RNA was reversed transcribed using ABI TaqMan RT kit (Applied Biosystems, Waltham, MA). The pre-designed primer to detect rat miR-153 (Assay ID: 001191), rat Nrf2 (Assay ID: Rn00477784_m1), Bcl-2 (Assay ID: Rn00597992_m1), Bax (Rn01480161_g1), and caspase-3 (Rn00563902_m1) was purchased from Thermo Fisher Scientific. U6 and Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) expression were used to normalize gene expression for miRNA and genes mRNA, respectively. Quantitative real-time PCR (qRT-PCR) was performed using an SYBR green/fluorescein or Taqman qPCR Master Mix on an ABI Prism 7500 system (Applied Biosystems).
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4

Measuring Inflammatory Mediator Expression

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RT-PCR analysis was performed as mentioned previously [46 (link)]. Briefly, THP-1 cells were incubated with vehicle control or α-MMC (40 μg/mL) for 24 h at 37 °C and the total RNA was then extracted using TRIzol assay (Invitrogen), followed by conducting the reverse transcription using the Prime Script RT Kit (Takara, Shiga, Japan) according to the manufacturer’s protocol. cDNA products were analyzed by Human Inflammatory Response and Autoimmunity RT2 Profiler™ PCR Array following the manufacturer’s instructions. LPS at sub-lethal dose of 1 µg/mL was used as positive control. Alternatively, real-time PCR on cDNA was carried out in an Applied Biosystems ViiA 7 real-time PCR machine (Thermo Fisher Scientific, Carlsbad, CA, USA) using SYBR Green assays (Bio-Rad, Hercules, CA, USA). The PCR primers were as follows: 5′-TTCGACACATGGGATAACGAGG-3′ and 5′-TTTTTGCTGTGAGTCCCGGAG-3′ for human IL-1β; 5′-ACTGAGAGTGATTGAGAGTGGAC-3′ and 5′-AACCCTCTGCACCCAGTTTTC-3′ for human IL-8; 5′-GAGGCCAAGCCCTGGTATG-3′ and 5′-CGGGCCGATTGATCTCAGC-3′ for human TNF-α; 5′-CAGCCAGATGCAATCAATGCC-3′ and 5′-TGGAATCCTGAACCCACTTCT-3′ for human MCP-1.
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5

Quantitative Real-Time PCR for Gene Expression Analysis

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Total RNAs was extracted by Trizol assay (Invitrogen, Carlsbad, CA) and subsequently cDNA
synthesized by TaKaRa Reverse Transcription Kit (Shiga, China). Power SYBR Green (TaKaRa)
was then used to prepare PCR reaction system. Transcript levels were determined by
normalized to 2−ΔΔCt method, actin and GAPDH were utilized as an internal
control.
The primer sequences used for expression study were:
Jagged 1:F- 5′-GAAGCAGAACACGGGCGTT-3′
R- 5′-CAGGTCACGCGGATCTGAT-3′
β-actin:F- 5′-CCTGGATAGC AACGTAC-3′
R- 5′-CACCTTCTACAATGAGCT-3′
GAPDH:F- 5′-CAATGACCCCTTCATTGA CC-3′
R- 5′-TGGAAGATGGTGATGGGATT-3′
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6

RNA Extraction Using TRIzol Assay

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TRIzol assay (Invitrogen, Carlsbad, CA) was used to extract the total RNA according to the instructions. The quality and quantity of RNA were monitored by OD260/280. The RNA OD260/280 (1.8–2.0) was used for the experiments.
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7

Quantifying M0 to M2 Macrophage Conversion

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RAW 264.7 cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM) containing 10% fetal bovine serum (FBS) and 1% penicillin-streptomycin.37 (link) M2 macrophages were induced by the addition of 20 ng/mL IL-4 (Invitrogen, Carlsbad, CA).27 (link) To identify the conversion rate of M0 macrophages, CD206 on membranes was evaluated by flow cytometry analysis. M0 or M2 macrophages were collected and incubated with 1 μL of anti-CD206 antibody (Biolegend, USA) in the dark for 30 min, then fluorescence-labeled secondary antibodies (Yeasen, China) were added for 30 min, the precipitate was collected via centrifugation at 800 rpm and resuspended in 300 µL PBS. The stained cells were subjected to examination through a flow cytometer (BD FACSCelesta). To quantify the gene expression levels, macrophages were harvested and used for RNA extraction with the Trizol assay (Invitrogen, USA); then, the expressions of M2 (CD206, IL-10) markers were performed with real-time polymerase chain reaction (RT-PCR). The experiment was repeated three times, primer sequences used are listed in Table S1.
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