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10 protocols using pe selection kit

1

Macrophage Response to Oxidized LDL in Aging

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All animal experiments were approved by the Institutional Animal Care and Use Committee (IACUC) and performed in accordance with the Washington University School of Medicine Animal Care and Use guidelines. We obtained old (i.e., ~18-month-old), female wild-type C57BL/6J mice from the National Institute on Aging (Bethesda, MD) and compared them to strain-matched young (i.e., ~3-month-old), female wild-type C57BL/6J controls. We harvested peritoneal macrophages five days after elicitation with a 2-ml intraperitoneal injection of 4% thioglycollate broth (Sigma-Aldrich, St. Louis, MO). We harvested splenic macrophages by performing positive magnetic cell separation with the PE selection kit (Stem Cell Technologies) and PE anti-F4/80 monoclonal antibody (clone: BM8; eBioscience, Waltham, MA), following manufacturer's instructions. We cultured peritoneal and splenic macrophages in Gibco™ RPMI 1640 medium (Thermo Fisher Scientific, Waltham, MA) supplemented with 10% fetal bovine serum (FBS; Atlanta Biologicals, Flowery Branch, GA) and 1% penicillin-streptomycin (Thermo Fisher Scientific). When indicated, we treated macrophages with 25 or 50 μg/ml of oxidized LDL (oxLDL; Alfa Aesar, Haverhill, MA) for 24 h prior to further analysis.
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2

Isolation of Human and Mouse B Cells

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CD19+ human B cells were separated from PBMC using the Human B cell Enrichment Kit or the Human B cell Isolation Kit (both stemcell, Canada) according to the manufacturer’s instructions. The purity of the separated cells as monitored by flow cytometry was always ≥ 93%. CD19+ mouse B cells were separated from spleen cells using the Mouse CD19 Positive Selection Kit II, and CD4+ and CD8+ T cells were separated after PE staining with the PE Selection Kit (both stemcell, Canada) according to the manufacturer’s instructions.
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3

Tracking WT and VISTA KO MDSCs in Tumors

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WT and VISTA KO MDSCs were dye-labeled with either CFSE or Violet CellTrace™ dyes (Thermofisher) at 1 μM concentration in PBS containing 0.1% BSA for 10 min at 37°C and then were washed three times in complete media. WT and KO cells were mixed at a 1:1 ratio. To ensure against dye-specific effects, experiments were repeated with the dye combination switched for WT vs. VISTA KO cells. Mixed dye-labeled WT and KO MDSCs were adoptively transferred i.v. into WT mice bearing tumors >10 mm in diameter. Each recipient mouse received 5 million WT and 5 million KO MDSCs. Twelve hours later, cells were isolated from the tumor with the Miltenyi tumor dissociation kit, and the spleen by homogenization through cell strainers. Tumor cells were enriched for MDSCs by staining with CD11b-PE (Biolegend) followed by enrichment for PE stained cells with a PE selection kit (StemCell Technologies). Finally, spleen and enriched tumor cells were stained for CD45, CD11b, and Gr1 as described above, and analyzed by flow cytometry. FACS analysis was performed to identify WT and KO MDSCs in the spleen vs. the tumor.
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4

Splenic Immune Cell Isolation

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The spleens were harvested after cryo-thermal therapy. Splenocytes were separated by Gentle MACS dissociator (Miltenyi Biotec, Bergisch Gladbach, Germany), following the removal of RBCs and tissue debris. CD68+ (PE) macrophages and Gr1+ (PE) MDSCs were isolated through PE selection kit (STEMCELL, Vancouver, BC, Canada). DCs were isolated through CD11c+ selection kit (STEMCELL). The isolated cells with a purity of >90% were used for experiments.
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5

Isolation of Thy-1+ Rat Bone Marrow Cells

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Bone marrow preparations from tibiae and femurs of adult male Sprague-Dawley rats (Charles River Laboratories International, Inc., Wilmington, MA) were obtained aseptically, and after a series of washes and centrifugations, a Thy-1+-enriched cell suspension was obtained by immunomagnetic cell selection using a customized kit (StemCell Technologies, Inc., Vancouver, Canada) as per the manufacturer's protocol.
Briefly, whole bone marrow was flushed out of the bones with ice-cold PBS using a 27G needle. The mixture was then centrifuged at 340 g for 10 minutes and the supernatant discarded while the pellet was suspended in 2% FBS and 1 mM EDTA PBS. The resulting cell suspension underwent a negative selection step in which CD4+, CD5+, CD8a+, and OX43+ cells were discarded followed by a positive selection step in which the cell suspension was enriched for CD90+/Thy-1+ cells using a phycoerythrin- (PE-) conjugated mouse anti-rat CD90/Thy-1 antibody (Abcam, Cambridge, MA) and a PE selection kit (StemCell Technologies, Inc.).
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6

Isolation and Purification of EGFR+ Cells

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Liver perfusion was done as described previously35 (link). Human EGFR+ cells were selected using PE selection kit (StemCell Technologies) according to manufacturer’s instruction. The enriched cells were then used for RNA extraction. The purity of enriched EGFR+ cells was >90% and the yield of live EGFR+ cells recovered from 16 weeks old control and pristine-treated mice ranged from ~400,000 to 800,000 cells/mouse.
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7

Isolation and Purification of TIM-1+ and TIM-1- B Cells

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T and B cells were isolated using Human T Cell or B cell Negative Selection Kit (Stemcell, Vancouver, Canada). The purity of T and B cells was >96%. For isolation of TIM-1+ B and TIM-1 B cells, purified B cells were stained with phycoerythrin (PE) mouse anti-human TIM-1 mAb (Biolegend, San Diego, CA) for 30 min. Then TIM-1+ B cells were isolated using PE Selection Kit (Stemcell) and the remaining B cells were TIM-1 (purity>95%).
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8

Neutrophil Elastase Inhibitor Silevestat Protocol

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The following reagents were purchased as detailed: acrylamide/bis-acrylamide, fibronectin, lipopolysaccharide (LPS) (from Escherichia coli, clone 055:B5), staurosporine, TEMED, Tween-20, the neutrophil elastase inhibitor silevestat, and zymosan A from Sigma-Aldrich; clodronate from Liposoma BV; anti-goat horseradish peroxidase-conjugated immunoglobulin G (IgG) and anti-rabbit horseradish peroxidase-conjugated IgG from Jackson Immuno Research Laboratories; WesternBright™ ECL from Advansta, fetal calf serum (FCS), L-glutamine, penicillin–streptomycin, RPMI 1640 and trypan blue from Biological Industries, Kibbutz Beit Haemek; goat anti-mouse CD11b (M-19) polyclonal IgG and rabbit anti-human Lf (H-65) polyclonal IgG from SantaCruz Biotechnology; FITC-conjugated anti-mouse Gr-1, PE-conjugated anti-mouse F4/80, PerCP-conjugated anti-mouse CD11b, APC-conjugated anti-mouse CXCR4 (clone BL6-146508) and enzyme-linked immunosorbent assay (ELISA) kits for TNFα, IL-6, IL-12, and IL-10 from Biolegend; cycloheximide (CHX) from Cayman Chemical; PE selection kit was purchased from Stem Cell Technologies; and Protease Inhibitors Cocktail was purchased from Roche. FKD and FKE peptides were organically synthesized by GL Biochem (Shanghai) Ltd.
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9

Isolation of Lgr5+ Cells from Samples

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The Lgr5+ cells were isolated using two methods: the magnetic enrichment of Lgr5+ cells (performed seven times) and FACSorting (performed five times). The PE Selection Kit (StemCell Technologies, catalog number: 18551) was used to isolate the Lgr5+ cells. The SB mixture was incubated with a PE selection cocktail (using an Lgr5-PE antibody) for 15 minutes and magnetic nanoparticles for 10 minutes at room temperature (RT). The mixture was placed into the magnet and incubated for 5 minutes at RT. The supernatant was then discarded, and the cells were plated for further culturing. Alternatively, the cells of the SB mixture were stained with the Lgr5-PE antibody and isolated via FACSorting using the BD FACSAria cell sorter at the UCLA Flow Cytometry Core Facility.
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10

T Cell Isolation and Proton Efflux Measurement

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T cells were isolated from splenocytes by PE Selection Kit from STEMCELL Technologies (Cambridge, MA) according to the protocol from the company. The isolated T cells were cultured at 37°C in 5% CO2 in the media supplemented with 10% FBS in the presence of 1‐mM propionic acid (MilliporeSigma, St. Louis, MO) after stimulation with 1 μg·ml−1 of SEB. After culture for 3 days, the T cells were collected for proton efflux rate and culture supernatants were tested for cytokine quantification by elisa.
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