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6 protocols using alexa fluor 488 fluorescent secondary antibody

1

High-Content Analysis of DNA Damage

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Cells were cultured in black-walled 96-well plates (PerkinElmer) and fixed and processed as described in Richardson et al. (2012) (link). Cells were probed with anti-γH2AX for 3 hr at room temperature followed by Alexa Fluor 488 fluorescent secondary antibody (Invitrogen) containing 2 μM Hoechst 33342 (Sigma). Plates were imaged using an automated high-content platform (GE Healthcare). The average intensity (iSig) of the γH2AX signal was recorded for all individual cells present in six eye fields in each of five wells. The integrated intensity for Hoechst 33342 was extracted using CellProfiler Image analysis freeware.
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2

Immunofluorescence Staining of Tubulin in HDFs

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HDFs were cultured in 15-mm diameter confocal petri dishes (NEST, China) overnight. After treatments, cells were fixed with 4% paraformaldehyde for 20 min. Then the cells were washed twice with PBS before blocking in immunostaining blocking buffer (Cat# P0102, Beyotime, China) for 1 h. After incubation with rat anti-tubulin antibody (Cat# ab6160, Abcam, United Kingdom) diluted in 1% bovine serum albumin (BSA) in PBS overnight at 4°C, the dishes were washed with PBS for three times and then stained with Alexa Fluor 488 fluorescent secondary antibody (Cat# A32731, Invitrogen, United States) at 37°C for 1 h in the dark. Nuclei were counterstained with 4’,6-diamidino-2-phenylindole (DAPI) (Cat# C1005, Beyotime, China), and the plates were sealed with anti-fluorescence quenching solution (Cat# P0126, Beyotime, China) before imaging. The pictures were acquired using a Leica confocal microscope (Leica Microsystems, Wetzlar, Germany).
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3

Investigating BTN3A2 Binding to Synaptic Proteins

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Cell supernatant containing the truncated isoform of BTN3A2 tagged by Flag (BTN3A-S-Flag) was produced from the HEK293T cells after transfection with expression vector pCMV-BTN3A2-S-Flag (Table S1) for 48 h. The supernatant was added to the transfected HEK293T cells overexpressing DsRed2, Nlgn1-DsRed2, Nlgn3-DsRed2, Nrxn1β-DsRed2, or Nrxn3β-DsRed2 (Table S1), respectively. After an incubation for 4 h, the medium was removed and cells were fixed with 4% paraformaldehyde for 15 min. Cells were then washed for three times with phosphate-buffered saline (PBS) and incubated at room temperature for 30 min in a blocking solution containing 5% bovine serum albumin in PBS. Mouse anti-Flag antibody was then added (Eno-Gene, E12–001, 1:500 ratio) and incubated for 2 h. The slides were washed three times with PBS and incubated with anti-mouse Alexa Fluor 488 fluorescent secondary antibody (Invitrogen, A21202, 1:500 ratio) for 1 h at room temperature to label BTN3A2. The slides were visualized under an Olympus FluoViewTM 1000 confocal microscope (Olympus, America).
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4

Rat CTLA-4 and PD-1 Protein Analysis

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Recombinant rat CTLA‐4 protein was purchased from Sino Biological (Wayne, PA, USA). After reconstitution, the recombinant protein was conjugated to flow cytometry beads using the Functional Bead Conjugation kit from Becton Dickinson (Wokingham, UK). Samples were stained with the 9H10 anti‐CTLA‐4 antibody and the relevant isotype control then with an Alexa Fluor 488 fluorescent secondary antibody (Thermo Fisher Scientific, Hemel Hempstead, UK) and assessed using flow cytometry. Recombinant rat PD‐1 protein was purchased from Sino Biological (Wyne, PA, USA), and cross‐reactivity has been previously validated (Smith et al, 2019).
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5

Visualizing Axonal Projections and GFP Signals

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To amplify and visualize GFP signals, 35-μm thick brain sections were incubated with a rabbit anti-GFP antibody (1:2000, Abcam). Signal was detected with a mouse Alexa Fluor 488 fluorescent secondary antibody (1:1000, Thermo Fisher Scientific). To visualize the CST projection fibers, 35-μm transverse spinal cord sections (C5–C8) were prepared from mice that received the BDA tracing. Solution containing streptavidin-horseradish peroxidase (Vectastain R.T.U. Elite ABC Reagent) was added to the sections for 1 hour followed by a 30 min incubation with PerkinElmer Biotinyl tyramide (1:100 in amplification diluent). Signals were detected following a 1-hour incubation with Extra-Avidin@ TRITC (1:200, Sigma-Aldrich).
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6

Immunofluorescent Analysis of ACTA2 and TNMD

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Samples (n = 5–6) were fixed with 10 (v/v)% formalin and permeabilized with 0.1 (v/v)% X-100 Triton (ThermoFisher Scientific, Waltham, MA, USA)/PBS for 10 min at RT. After PBS rinsing, non-specific binding was blocked with 2.5% normal horse serum (Vector Laboratories, Burlingame, CA, USA) for 1 h at RT. Then, samples were incubated overnight at 4 °C with primary antibodies diluted in 0.1% BSA/PBS against ACTA2 (rabbit, ab32575, Abcam, Cambridge, UK), and anti-TNMD (rabbit polyclonal) generated against TNMD C-terminus (237-317 aa) provided by Prof. Denitsa Docheva (produced in co-operation with Metabion International, Planegg, Germany, PAB 201603-00002). Subsequently, samples were washed in PBS, incubated with 0.3% (v/v) hydrogen peroxide (PanReac AppliChem, Barcelona, Spain) for 15 min at RT, and incubated with anti-rabbit AlexaFluor 488 fluorescent secondary antibody (ThermoFisher Scientific, Waltham, MA, USA) for 1 h at RT. Finally, nuclei and F-actin filaments were counterstained with DAPI and phalloidin for 30 min at RT, respectively. Immunolabeled samples were analyzed through confocal laser scanning microscopy CLSM, TCS SP8, Leica, Wetzlar, Germany) and the quantitative analysis of the immunofluorescence images was performed using ImageJ 1.520 (NIH, Bethesda, MD, USA) software.
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