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5 protocols using tnfα percpcy5

1

T cell Activation and Cytokine Analysis

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PBMCs were cultured in RPMI-1640 medium (GIBCO) containing 10% fetal bovine serum and stimulated with anti-CD3/CD28 (2 and 5 μg/ml) antibodies or phorbol 12-myristate 13-acetate (PMA)/ionomycin (50 ng/ml and 1 μg/ml, respectively), plus Golgiplug (BD Pharmingen, San Diego, CA, USA) for 5 h. The cells were then surface stained with CD4-FITC, CD8-APC-H7, PD-1-PE and TIM-3-PE-Cy7, and intracellularly stained with IFN-γ-PE-CF594, TNF-α-PerCp-Cy5.5 or IL-2-PerCp-Cy5.5 (BD Pharmingen) antibodies. A violet amine reactive dye (Invitrogen, Grand Island, NY, USA) was used to assess cell viability.
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2

Comprehensive Immunophenotyping Protocol

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Chemicals and reagents were purchased from Sigma-Aldrich (St. Louis, MO). Anti-mouse or anti-human fluorochrome labeled antibodies (Abs): CD4-PB, CD62L-APC, CD44-PerCP-Cy5.5, CD127-PE, FoxP3-FITC, Tim3-PE, PD1-PECy7, IFN-γ-PECy7, TNFα-PerCPCy5.5, IL-17-PerCPCy5.5, CD25APC-Cy7, CD45RA-PE, CD45RO-APC, and Abs for ELISA were procured from BD Pharmingen (San Diego, CA) or otherwise mentioned. RPMI-1640 and FBS were purchased from GIBCO (Grand Island, NY) for cell culture. For culturing of cells, tissue culture grade plastic-wares were purchased from BD Biosciences (Bedford, MA). Ab against iNOS used in Western blot was procured from (Abcam, Cambridge, United Kingdom).
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3

Comprehensive Immunophenotyping of Monocytes and Macrophages

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Brefeldin A solution (eBioscience, CA, USA) was added to monocytes and macrophages cultures (10 μg/ml) 15 hours before the cells were harvested. Cells were stained with appropriate anti-human monoclonal antibodies such as CD14-FITC (eBioscience), CD16-BD Horizon PE-CF594 (BD Biosciences, New Jersey, USA), CD86-PE (eBioscience), CD11b-PE/Cy7 (eBioscience), HLA-DR-APC/Cy7 (BioLegend, CA, USA), PD-L1-APC (eBioscience), CD80-PerCP3Flour®710 (eBioscience), CD163-APC (eBioscience), CD206-APC/Cy7 (Biolegend), CD64-PE (Biolegend), CD209-PE/Cy7 (eBioscience), T-bet-PerCP/Cy5.5 (eBioscience), IL-12(p40)-PE (eBioscience), IL-10-Alexa Fluor 647 (eBioscience) and TNFα-PerCP-Cy5.5 (BD PharmingenTM) following manufacturer’s protocol. Data were acquired on FACSAria III flow cytometer (BD Biosciences) and analyzed with FlowJo Version 7.6 (Ashland, OR, USA) based on 20,000 cells.
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4

Detailed Immunophenotyping Assay Protocol

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Chemicals and reagents were purchased from Sigma Aldrich (St. Louis, MO). Anti–mouse flurochrome labeled antibodies (Abs): CD4-PB, CD8-APC-Cy7, CD62L-APC, CD44-PerCP-Cy5.5, CD127-PE, KLRG1-PE, IFN-γ-PECy7, TNFα-PerCPCy5.5, IL-17-PerCPCy5.5 and Abs for ELISA were procured from BD Pharmingen (San Diego, CA); CD27-FITC, CD43-PE, CXCR3-FITC and CCR6-APC from Biolegend (San Diego, CA) or otherwise mentioned. RPMI-1640 and FBS were purchased from GIBCO (Grand Island, NY). For culturing of cells, tissue culture grade plastic-ware was purchased from BD Biosciences (Bedford, MA).
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5

Multiparameter Flow Cytometry of CSF

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The following monoclonal antibodies were used in the study: CD14-FITC, IFN-γ-FITC, GM-CSF-PE, CD3-PerCP, TNF-α-PerCP-Cy5.5, CD16-PE-Cy7, CD19-PE-Cy7, CD56-APC, CD8-APC-H7, CD3-BV421, and CD45-V500 (BD Biosciences, San Diego, CA). IL-17-APC was obtained from R&D Systems, Minneapolis, MN. For patients whose CSF samples were 3-5 ml (36 M+ and 86 M- patients), only a tube measuring surface antigens was studied. In cases of 5-8 ml of CSF (36 M+ and 105 M- patients), the samples were divided into two identical aliquots, and surface antigens and intracellular cytokine production were studied as detailed below. The precise CSF volume used in every case was recorded to calculate total cell numbers.
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