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2 protocols using cm3 sensor chips

1

Monitoring SOSIP gp140 Env Triggering by sCD4

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Triggering of SOSIP gp140 Envs by soluble CD4 (sCD4) was monitored via surface Plasmon resonance and was performed on a BIAcore 3000 instrument (GE Healthcare). Antibodies were immobilized using direct immobilization using amine coupling on CM3 sensor chips (GE Healthcare) at ~5000 RU. The SOSIP concentration in the presence and absence of a 1:3 mixture of sCD4 was 200 nM. Samples were injected over at a rate of 30 μl/min for a total of 90 μl using the high performance kinject injection mode with a dissociation phase of 600 s over four flow cells containing 17B, 19B, VRC01, or the Ab82 control. The chip surface was regenerated between measurements using two injections of 20 μl of glycine pH 2.0 at a flow rate of 50 μl/min. The resulting response curves were processed using the BIAevaluation 4.1 (GE Healthcare) software using a double reference subtraction. Reported response values were determined taking the average response from 170 to 175 s after the start of the injection.
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2

Characterization of Bevacizumab Binding Interactions

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Poly-ε-caprolactone (PCL; 80 kDa), 2,2,2-trifluoroethanol (TFE), basic fuchsin, Dulbecco's phosphate buffered saline (PBS), fluorescein isothiocyanate isomer I (FITC), sodium bicarbonate, sodium carbonate monohydrate, Trizma ® hydrochloride, Trizma ® base, InstantBlue and human vascular endothelial growth factor (VEGF165) were purchased from Sigma-Aldrich (UK). Bevacizumab (Avastin ® , 25 mg/mL, Genentech, US) was obtained from clinical donations that remained after an appropriate dose had been administered to patients. MicroBCA protein assays, Pierce TM Silver Stain kits and PD-10 desalting columns were procured from Thermo Fisher Scientific (UK). Novex bis-tris 4-12% SDS-PAGE gels, NuPAGE MOPS SDS running buffer, Novex Sharp pre-stained protein standard and NuPAGE LDS sample buffer (4X) were obtained from Life Technologies (UK). BIAcore consumables (including an amine coupling kit for ligand immobilisation which contained Nhydroxysuccinimide (NHS) and 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC), a regeneration scouting kit, and CM3 sensor chips) were sourced from GE Healthcare (UK). Vivaspin 6 ® centrifugal concentrators (molecular weight cut-off, MCWO 30 kDa) were purchased from VWR International (UK).
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