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280 protocols using sodium phosphate

1

Bevacizumab Effects on Corneal Cells

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HLE cells were treated with four concentrations of Bevacizumab: 0.125 mg/mL, 0.25 mg/mL, 0.50 mg/mL and 1 mg/mL for different times depending onto each assay as described in the sections below. These concentrations were chosen based on previous reports studying in vitro effects of Bevacizumab on corneal epithelial cells and fibroblasts [7 (link),8 (link)]. These concentrations were prepared using a stock solution of 25 mg/mL Bevacizumab in serum-free DMEM/F12 supplemented with 0.1% BSA. For the proliferation, scratch wound and colony forming efficiency assay, the drug substrate (sub) as described in the Bevacizumab leaflet, was used as a control in the equivalent amounts corresponding to the four different Bevacizumab concentrations (respectively referred to as sub1–4). The substrate consisted of 240 mg trehalose dihydrate, 23.2 mg sodium phosphate (monobasic, monohydrate), 4.8 mg sodium phosphate (dibasic, anhydrous) and 1.6 mg polysorbate 20 (all from Sigma, Munich, Germany) in 4 mL of DDH2O. The selection of Bevacizumab concentrations and controls was based on previous reports [25 (link),26 (link)].
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2

NMR Analysis of Metabolites in Biofluids

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Methanol, chloroform, sodium phosphate (monobasic; NaH2PO4), sodium phosphate (dibasic; Na2HPO4), and 3-(trimethylsilyl)propionic acid-2,2,3,3-d4 sodium salt (TSP) were obtained from Sigma-Aldrich (St. Louis, MO). Standard compounds used to obtain spectra under conditions identical to blood and plasma and for spiking experiments to confirm assignments were obtained from Sigma-Aldrich (St. Louis, MO). Deuterium oxide (D2O) was obtained from Cambridge Isotope Laboratories, Inc. (Andover, MA). Deionized (DI) water was purified using an in-house Synergy Ultrapure Water System from Millipore (Billerica, MA). All chemicals were used with no further purification.
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3

Senescence-Associated β-Galactosidase Assay

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Cells were fixed for 15 min (room temperature) in 1% formaldehyde, washed with PBS and incubated at 37°C (no CO2) with fresh staining solution: 0.3 mg/mL of 5-bromo4-chloro-3-indolyl β-D-galactoside (X-Gal, Fermentas), 40 mM citric acid (Sigma), 40 mM sodium phosphate (Sigma) (stock solution (400 mM citric acid, 400 mM sodium phosphate) must be at pH6), 5 mM potassium ferrocyanide (Sigma), 5 mM potassium ferricyanide (Sigma), 150 mM NaCl (Sigma), 150 mM MgCl2 (Sigma). SA-β-GAL-positive cells were quantified after 16-20 hrs as compared to unstained cells.
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4

Senescence-Associated β-Galactosidase Assay

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Cells (50,000 cells/6-well plates for 4 days of treatment) were fixed for 15 min (room temperature) in 2% formaldehyde, washed with PBS and incubated at 37 °C with fresh staining solution: 0.3 mg/ml of 5-bromo4-chloro-3-indolyl β-d-galactoside (X-Gal, Fermentas), 40 mM citric acid (Sigma), 40 mM sodium phosphate (Sigma; stock solution (400 mM citric acid, 400 mM sodium phosphate) must be at pH 6), 5 mM potassium ferrocyanide (Sigma), 5 mM potassium ferricyanide (Sigma), 150 mM NaCl (Sigma) and 150 mM MgCl2 (Sigma). The senescence-associated (SA)-β-Gal-positive cells were quantified after 16–20 h as compared to unstained cells.
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5

Antioxidant Potential Determination

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All the reagents including Folin–Ciocalteu reagent, 1,1 diphenyl-2-picrylhydrazyl radical (DPPH), butylated hydroxyl toluene (BHT) and gallic acids were purchased from Sigma chemicals (St. Louis, MO, USA). Chemicals and solvents comprising sodium phosphate, anhydrous sodium carbonate, sodium hydroxide, ferric chloride, methanol, ethanol, ferrous chloride, potassium ferricyanide, sulfuric acid, sodium phosphate, sodium bicarbonate, sulfo-salicylic acid, trichloroacetic acid, orthophosphoric acid, ninhydrin, toluene, glacial acetic acid and boric acid were of analytical grade and procured from Merck (Darmstadt, Germany). Ultra-pure water (Victor diagnostic laboratories, Pakistan) was used as solvent during in vitro assays.
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6

Streptavidin-Aptamer Biosensor for Malaria Detection

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Streptavidin from Streptomyces avidinii, horseradish peroxidase (HRP), lysozyme, imidazole, Tris powder, 1-fluoro-2,4-dinitrobenzene (FDNB), phenylmethylsulfonyl fluoride (PMSF), sodium bicarbonate, sodium carbonate, sodium phosphate, sodium periodate, and sodium borohydride were purchased from Sigma-Aldrich (St. Louis, MO, USA). Ampicillin and isopropyl β-d-1-thiogalactopyranoside (IPTG) were purchased from LPS Solution (Daejeon, Republic of Korea). All enzymes for plasmid construction were purchased from Enzynomics (Daejeon, Republic of Korea). Pyridoxal phosphate and phosphate buffered saline (pH 7.4) were obtained from AMRESCO (Solon, OH, USA), and ethylene glycol was purchased from Junsei Chemical (Tokyo, Japan). Bovine serum albumin (BSA) was purchased from Roche (Basel, Switzerland). The bicinchoninic acid (BCA) protein assay kit was purchased from Thermo Fisher Scientific (Waltham, MA, USA). The 3,3′,5,5′-tetramethylbenzidine (TMB) substrate was purchased from Kementec (Taastrup, Denmark). The single-stranded DNA aptamer that specifically binds to PfLDH called ‘2008s’ (5′-CTGGGCGGTAGAACCATAGTGACCCAGCCGTCTAC-3′) was synthesized by Integrated DNA Technologies (Singapore, Republic of Singapore), and biotin or HRP was conjugated at 3′-end of aptamer, respectively. Human LDH (hLDH) was purchased from Abcam (Cambridge, UK).
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7

Senescence-Associated β-Galactosidase Staining

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Cells were fixed for 10 min at room temperature in 1% formaldehyde, washed with PBS and incubated at 37°C for 16 h in the absence of CO2 with freshly made staining solution: 0.3 mg/ml of 5-bromo-4-chloro-3-in dolyl-β-d-galactopyranoside (X-Gal; Promega Corporation; cat. no. V394A), 40 mM citric acid (Sigma-Aldrich; Merck KGaA), 40 mM sodium phosphate (Sigma-Aldrich; Merck KGaA) [stock solution (400 mM citric acid, 400 mM sodium phosphate) held at pH 6], 5 mM potassium hexacyanoferrate (Sigma-Aldrich; Merck KGaA), 5 mM potassium ferricyanide (Sigma-Aldrich; Merck KGaA), 150 mM NaCl (Sigma-Aldrich; Merck KGaA) and 150 mM MgCl2 (Sigma-Aldrich; Merck KGaA). SA-β galactosidase staining was observed using a light microscope (Life Technologies; EVOS XL Core) and images were captured at ×40, ×100 and ×200 magnification in different areas in examples of each condition (31 (link)).
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8

Spectrophotometric Analysis of Inorganic Compounds

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All
materials were used
in their original form as received from commercial suppliers. Sodium
chloride (99.5–100%), sulfuric acid (37%), nitric acid (90%),
calcium chloride (95%), sodium bicarbonate (98%), and sodium sulfate
(≥98%) were purchased from VWR Chemicals. Sodium phosphate
(96%), m-xylene (98%), potassium phosphate tribasic
(97%), calcium phosphate (>96%), and magnesium phosphate (98%)
were
supplied by Sigma-Aldrich. DMSO (99%) used was purchased from Alfa
Aesar. All the salts used contained a common sodium cation in order
to eliminate any possible deviations induced by the use of different
cationic species. A Shimadzu UV-3600 UV–vis–NIR spectrophotometer
was used for the measurement and recording of UV spectra.
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9

Hydroxyapatite Chromatography Protein Purification

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A 5 ml pre-packed ceramic hydroxyapatite chromatography type II media cartridge (Bio ScaleTM Mini CHT Type II, Bio-Rad, Hercules, CA) was used. The CHT column was connected to the purification system and prepared for injection after equilibration with 25 ml of buffer C, followed by 25 ml of buffer D [400 mM sodium phosphate (Sigma-Aldrich, St. Louis, MO), pH 6.95]. The concentrated protein was injected onto the CHT column at a flow rate of 1 ml/min and the flow-through was collected in 1 ml fractions. These fractions were screened for protein activity using the trypsin inhibitory activity assay (see 2.7.1). Fractions that had the highest activity were pooled, buffer exchanged as before to phosphate buffered saline pH 7.2 (BupH phosphate buffered saline packs, Thermo Fisher Scientific Inc., Rockford, IL), and concentrated to a final protein concentration of 1 mg/ml. The concentrated protein was stored at –80°C for further characterization.
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10

Lipid Nanoparticle Preparation and Characterization

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Sucrose, glucose, HEPES (4–2(2-hydroxymethyl)-1-piparazineethane-sulfonic acid), sodium chloride, and hydrochloric acid (HCl) were purchased from Fisher Scientific. Ammonium sulfate, sodium phosphate, potassium phosphate, potassium chloride, sodium bicarbonate, lectin protein from Canavalia ensiformis, ATTO-488 NHS-ester, TCEP (tris(2-carboxyethyl) phosphine hydrochloride), and doxorubicin were purchased from Sigma-Aldrich. Fetal bovine serum (FBS), trypsin, penicillin, streptomycin, L-glutamine, PBS (phosphate buffered saline), and DMEM (Dulbecco’s modified Eagle medium) were purchased from GE Healthcare. Texas Red-DHPE (Texas Red-1,2-Dihexadecanoyl-sn-glycero-3-phosphoethanolamine) was purchased from Thermofisher. Trypan blue was purchased from Life Technologies. DPPC (1,2 – dipalmitoyl-sn-glycero-3-phosphocholine), DOPC (1,2 dioleoyl-sn-glycero-3-phosphocholine), cholesterol (from ovine wool), DOTAP (1,2 dioleoyl--3-trimethylammonium-propane), and PEG2000-DPPE (1,2 dipalmitoyl-sn-glycerol-3-phosphoethanolamine-N-[Methoxy(Polyethylene glycol)-2000]) were all purchased from Avanti Polar Lipids (Alabaster, AL). LIVE/DEAD fixable violet dead cell stain kit was purchased from Thermo Fisher Scientific. All reagents were used without further purification.
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