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Biotek synergy h1

Manufactured by Agilent Technologies
Sourced in United States

The BioTek Synergy H1 is a multi-mode microplate reader designed for a variety of applications. It features absorbance, fluorescence, and luminescence detection capabilities. The instrument can accommodate different types of microplates and supports both endpoint and kinetic measurements.

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159 protocols using biotek synergy h1

1

Antioxidant Capacity and Glutathione Quantification

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Total antioxidant capacity was measured as the combined antioxidant activities of all serum constituents, including vitamins, proteins, lipids, glutathione, and uric acid. The assay relied on the ability of antioxidants in the sample to inhibit the oxidation of ABTS (2,2′-Azino-di-[3-ethylbenzthiazoline sulphonate]) to ABTS•+ by metmyoglobin and was quantified as Trolox, a water-soluble tocopherol analogue, equivalents. The decrease in ABTS oxidation was quantified colorimetrically at 734 nm using a Biotek Synergy H1 spectrophotometer (Agilent, Santa Clara, CA, USA).
Reduced glutathione (GSH), oxidized glutathione (GSSG), and total glutathione in serum samples were quantified in duplicate using fluorometric GSH/GSSG ratio detection assay kit (Abcam, Cambridge, MA, USA) at the excitation/emission of 490/520 nm (Biotek Synergy H1).
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2

Intracellular NADH/NAD+ and ATP Quantification

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To measure the intracellular NADH/NAD+ ratio, NAD/NADH‐GloTM Assay kit (Promega, WI, US) was utilized. Briefly, the cell broth was prepared by cultivating to exponential phase using production medium. The culture broth was mixed with DTAB solution for 5 min. For measuring NADH, 0.4 N of HCl was added to the reaction mix, whereas for measuring NAD+, nothing was added. The sample was heated to 60°C for 15 min and cooled to 25°C. The HCl/Trizma solution was added to the reaction mix for NADH, whereas Trizma solution was added to that for NAD+. The prepared solutions were mixed with detection reagent at a ratio of 1:1 (v/v) and incubated for approximately 30 min. The luminescence was measured using microplate reader Biotek Synergy H1 (Biotek, VT, USA). The same methods were applied for measuring NAD(H) standard solution. The NADH and NAD+ were quantified, and the ratio of them was calculated.
For measuring the intracellular ATP content, BacTiter‐GloTM kit was utilized (Promega, WI, USA). Briefly, the cell broth was prepared by flask culture. The cell broth in exponential phase was taken and washed using distilled water. The same volume of cell broth and reaction mix was resuspended together and rested for 5 min in ambient condition. The luminescence was measured using microplate reader Biotek Synergy H1 (Biotek). The same methods were applied for measuring the ATP standard solution.
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3

Epigenetic and Inflammatory Biomarkers

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Circulating levels of tH3, H3K27ac, and H3K4me3 were measured using enzyme-linked immunosorbent assay (ELISA) kits (Epigentek; Farmingdale, NY) and read on BioTek Synergy H1 (BioTek Instrument Inc., Winooski, VT) at 450 nm with 570 nm correction. CRP was also measured with an ELISA kit (Sino Biological; Wayne, PA) and read on BioTek Synergy H1 (BioTek Instrument Inc., Winooski, VT) as specified above. TNFα, IL-6, and HSP-60 were measured using a multiplex assay (Thermo Fisher, Philadelphia, PA) and analyzed on 3D FlaxAmp (Thermo Fisher, Philadelphia, PA).
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4

Enzymatic Assay of Lipogenic Enzymes

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The activities of FASN and ACC in the liver tissue were determined using commercially available kits from Gene Lab (Beijing, China) and Solarbio (BC0415, Beijing, China), respectively. FASN catalyzed malonyl coenzyme A, acetyl coenzyme A, and NADPH to produce long chain fatty acids and NADP+. NADPH had a characteristic absorption peak at 340 nm. The activity of FASN was calculated by measuring the decreasing rate of absorbance at 340 nm (Bio Tek Synergy H1, Bio Tek Instruments, Inc., Winooski, VT, USA). ACC catalyzed acetyl CoA, NaHCO3, and ATP in the production of malonyl CoA, ADP, and inorganic phosphorus. Molybdenum blue and phosphate generated substances with characteristic absorption peaks at 660 nm (Bio Tek Synergy H1, Bio Tek Instruments, Inc., Winooski, VT, USA). The increase of inorganic phosphorus was measured by the ammonium molybdate phosphorus determination method to reflect the ACC activity.
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5

Quantifying Serum FGF21 Levels

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Serum concentrations of FGF21 were determined using a commercially available colorimetric sandwich ELISA (RD291108200R, BioVendor, Brno, Czech Republic) according to the manufacturer's instructions. Serum samples were diluted 10–20 times prior to analysis. The resulting absorbance was measured on a microplate reader (BioTek Synergy H1, Agilent Technologies) and FGF21 concentrations were calculated using the four‐parameter approach in R26 using RStudio27 and the drc package.28 For samples with concentrations below the limit of detection, we computed their concentration as equal to the lowest detected.
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6

Quantifying Serum FGF21 Levels

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Serum concentrations of FGF21 were determined using a commercially available colorimetric sandwich ELISA (RD291108200R, BioVendor, Brno, Czech Republic) according to the manufacturer’s instructions. Serum samples were diluted 10–20 times prior to analysis. The resulting absorbance was measured on a microplate reader (BioTek Synergy H1, Agilent Technologies) and FGF21 concentrations were calculated using the four-parameter approach in R (26 ) using RStudio (27 ) and the drc package (28 ). For samples with concentrations below the limit of detection, we computed their concentration as equal to the lowest detected.
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7

Bacterial Genomic DNA Extraction

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For genomic DNA extraction, 5 mL of bacteria was grown in their respective media to stationary phase. Two milliliters of the culture were used for genomic DNA extraction and purification using the Wizard Genomic DNA Purification Kit (Promega, Madison, WI, USA) following the manufacturer’s specifications. The gDNA was quantified using the QuantiFluor® ONE dsDNA System (Promega, Madison, WI, USA) and fluorescence was measured using a plate reader Biotek Synergy H1 (Agilent, Santa Clara, USA) at 504 nmEx/531 nmEm.
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8

Compound Cytotoxicity Screening in EC Cells

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EC cells were seeded into 96‐well plates at a concentration of 8 × 103 cells well−1 in a 100 µL volume and cultured overnight. Cells were then treated with various concentrations (0.01, 0.1, 1, 10, 100 µm) or fixed concentrations (10 µm) of compounds to test their viability. Following treatment for 48 h, the supernatant was removed, and 100 µL of CCK‐8 (Yeasen, Shanghai, China) solution (1:10 dilution in complete medium) was added to each well and incubated in the dark for 1 h at 37 °C. Absorbance at 450 nm was measured using a microplate reader (BioTek Synergy H1, Agilent Technologies, Santa Clara, CA, USA).
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9

Bacterial Total RNA Extraction

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Total RNA extraction was performed using the GeneJET RNA Kit (Thermo Fisher, Waltham, MA, USA) following the manufacturer’s specifications. Briefly, the bacterial pellet obtained was resuspended in 100 µL of TE buffer supplemented with lysozyme (0.4 mg mL−1). It was incubated for 5 min at room temperature, and then 300 µL of lysis buffer was added, followed by stirring for 15 s. Next, 180 µL of ethanol (96–100%) was added and mixed by pipetting. The lysate was transferred to a column and centrifuged for 1 min at 12,000× g. The column was washed with 700 µL of Wash Buffer 1, followed by 600 µL and 250 µL of Wash Buffer 2. Finally, the RNA was eluted with 50 µL of DEPC-treated water. The gDNA was quantified using the QuantiFluor® RNA System (Promega, Madison, WI, USA) and fluorescence was measured using a plate reader Biotek Synergy H1 (Agilent, Santa Clara, CA, USA) at 492 nmEx/540 nmEm.
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10

Effect of Natural Compounds on Liver Cancer Cells

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HepG2 and Hep3B cells were seeded in 96-well plates at a density of 10,000 cells/well and were grown for 24 h. The treated cells were incubated for 24 h with 0–240 µM NAR or 0–240 µM HES or with the combination of 30 µM NAR + 30 µM HES (N + H) or with C + P + Q or MIX treatments. The control cells were incubated for 24 h with 0.4% DMSO. The effect of natural compounds on cell viability was evaluated using the CellTiter 96 AQueous One Solution Cell Proliferation Assay (Promega s.r.l., Milan, Italy). This assay is based on the reduction of the MTS reagent [3-(4,5-dimethylthiazol-2yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)2H-tetrazolium, inner salt] into a colored formazan product that is soluble in culture medium. This conversion is accomplished by NADPH or NADH produced by dehydrogenase enzymes in metabolically active cells. The quantity of formazan product, measured by absorbance at 490 nm with the Biotek Synergy H1 plate reader (Agilent, Santa Clara, California; USA), is directly proportional to the number of living cells in the culture. The results were expressed as a percentage of residual cell viability compared to control cells (CTRL) treated with 0.4% DMSO (set at 100% cell viability) for both HepG2 and Hep3B cell lines.
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