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48 protocols using extravidin

1

Immunohistochemical Staining of Ovarian Tissues

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Formalin fixed ovarian tissue was paraffin embedded, 5 μM sections were cut and mounted on SuperFrost plus microscopic slides. Following deparaffinization and rehydration, slides were treated with 3% (v/v) hydrogen peroxide for 10 mins to inhibit endogenous peroxide activities. Tissues were then blocked in 5% bovine serum albumin with 0.02% sodium azide for 10 min and incubated with primary antibodies overnight at 4°c. Following 1x PBS rinse, biotinylated secondary antibodies from respective species were applied for a 2-h incubation at room temperature (1:100 dilution, Sigma) with horseradish peroxidase (Extravidin, 1:50 dilution, Sigma) followed by a brief incubation with diaminobenzidine tetrahydrochloride (Sigma). Tissues were counterstained with Carazzi’s hematoxylin for 1 min, dehydrated and mounted with Permount (Sigma).
For immunofluorescence, after rehydration and blocking with 5% BSA, sections were simultaneously stained overnight with anti-CD31 and anti-NG-2. Sections were stained with secondary antibodies against anti-CD31 (Alexa Fluor®594 nm, red, 1:100) and α-SMA (Alexa Fluor®488 nm, green, 1:100) for 1 h at room temperature. Images obtained under both 594 nm and 488 nm channels using a Fluorescent microscope (Olympus) and Metamorph Imaging software (Burlingame CA).
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2

IgG Subclass ELISA for Pfs25 Antibodies

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For the IgG subclass endpoint ELISA, biotinylated anti-mouse IgG1 or IgG2a (BD bioscience) was used as the secondary Abs. After incubation and wash, alkaline phosphatase conjugated ExtrAvidin (Sigma-Aldrich, UK) was added at 1:5000 in PBS and incubated for 30 min at RT. The development and measurement of OD and the endpoint titer determination were done as before (10 (link)).
Human Ab isotype ELISAs were also performed using methodology described in detail elsewhere (70 (link)), except that plates were coated with recombinant Pfs25 produced from the Drosophila S2 cells at 2 μg/ml.
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3

Immunohistochemical Staining Protocol

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DAB-peroxidase IHC was performed as described by Kwakowsky et al. (2018 (link)). In brief, sections were washed in PBS with 0.2% Triton X-100 (PBST) before blocking for endogenous peroxidases (50% methanol and 1% H2O2) for 20 min, followed by three 10-min washes in PBST and incubated for 72 h in primary antibody in immunobuffer at 4°C (Table 3). Following three 10-min washes in PBST the sections were incubated for 24 h with the biotinylated secondary antibody (anti-mouse IgG-Biotin antibody produced in goat 1:1,000) in immunobuffer at room temperature (RT). The sections were then washed in PBST before incubation with ExtrAvidin (1:1,000, E2886; Sigma, St. Louis, MO, USA) in immunobuffer for 4 h at RT, followed by three 10-min washes in PBST before development in 0.05% DAB and 0.01% H2O2 in 0.1 M phosphate buffer. Sections were washed in PBST, mounted onto glass slides, dried, dehydrated through a graded series of ethanol, and cleared in xylene. The slides were coverslipped with DPX mountant (1019790500; Merck, Whitehouse Station, NJ, USA). The sections were imaged on either a Leica DMRB light microscope or a Leica MZ6 dissecting microscope (Wetzlar, Germany).
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4

Quantifying Vaccinia-Specific T-Cell Responses

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Mononuclear cells were obtained from splenocytes by density gradient centrifugation on Lympholyte-M (Cedarlane). One million mononuclear cells in triplicate wells were seeded in 96-well MSIP plates (Millipore) coated with anti-IFNγ capture mAb (Mabtech AB). They were cultured in 200 µL RPMI-1640 medium (Sigma) supplemented with 10% FCS, 50 µM β-mercaptoethanol (Sigma), 40 µg/mL gentamycin (Schering-Plough) and 2 mM L-glutamine (Sigma), in the presence of 1 µg/mL of H-2d-restricted vaccinia-specific peptide (SPGAAGYDL) or 1 µg/mL of H-2d-restricted irrelevant peptide (TPHPARIGL). After 18 h incubation at 37°C, 5% CO2, plates were washed and immunospots were revealed using biotinylated anti-IFNγ detection mAb (Mabtech), Extravidin (Sigma) and BCIP/NBT solution (Sigma). Spots were counted using a CTL Immunospot reader.
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5

Enzyme-Linked Immunosorbent Assay Protocol

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Enzyme-linked immunosorbent assay was performed as previously described.61 (link) Briefly, 96-well enzyme-linked immunosorbent assay plates (Nalge Nunc International, Rochester, NY, USA) were coated with 1 μg/ml of capture antibody (Ab62) in 50 mM carbonate buffer (pH 9.6) at 4 °C overnight. After washing with PBS with 0.05% Tween 20 (PBST), SuperBlock T20 (PBS) Blocking Buffer (Thermo Scientific, Rockford, IL, USA) was added to each well. After incubation for 1 h at room temperature with shaking, plates were washed five times in PBST. Samples and standards were incubated at room temperature for 2.5 h with shaking. After washing with PBST, 1 μg/ml of biotinylated Ab62 in blocking buffer was added to each well. After incubation for 1.5 h at room temperature, the plates were washed with PBST. Avidin-conjugated peroxidase (ExtrAvidin, Sigma) was added to each well. After incubation for 1 h at room temperature, plates were washed with PBST. One hundred microliters of 3,3′,5,5′-tetramethylbenzidine solution (Sigma) were added to each well and incubated for 15 min with shaking. To stop the reaction, 50 μl of 2 N H2SO4 was added to each well. The absorbance was measured at 450 nm.
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6

Assessing AV22 T Cell Activation

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A T cell transfectoma bearing the AV22 TCR (Bowerman et al., 2011 (link)) was stimulated in culture alone or with various concentrations of BeSO4. The surface of the culture wells had various biotinylated MHCII-peptide combinations captured via Extravidin (Sigma). The extent of AV22 activation was assessed by IL-2 in the culture supernatants after 24 hrs (White et al., 2000 (link)).
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7

Biotinylated Aptamer-Based CRP Detection

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Cystamine dihydrochloride (Cys), glutaraldehyde solution 25% (Glu), phosphate buffered saline (PBS), poly(ethylene glycol) methyl ether thiol (PEG-SH), bovine serum albumin (BSA), extravidin were purchased from Sigma-Aldrich(St. Louis, MO, U.S.A.). Calcium chloride anhydrous (CaCl2), sodium chloride (NaCl), TRIS base for molecular biology and ethanol were all purchased from Fischer Scientific. Nanostrip was purchased from Cyantek. Biotinylated CRP_specific Aptamer was purchased from OTC Biotech. Biotinylated control aptamer with the following sequence 5′-GGGCCTCCGGT -TCATGCCGC-3′ was purchased from Integrated DNA technologies. QDot 800 streptavidin conjugate was purchased from Life Technologies.
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8

HCV Antigen Tetramer Synthesis

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Biotinylated E2 monomers were synthesized by the laboratory of Dr. Arash Grakoui as previously described [25 (link)]. Tetramers were prepared by adding phycoerythrin (PE)- (Sigma-Aldrich) or allophycocyanin (APC)-labeled ExtrAvidin (Thermofisher), 5 times using 7.5 μl with 10 min incubation at room temperature each time. Tetramer staining was performed using 0.5 μL of Tetramer-PE and 0.5 μL of Tetramer-APC per sample. The MHC class I monomers were synthesized by either the National Immune Monitoring Laboratory (Montréal, QC, Canada) or the NIH Tetramer Core Facility (Emory University, Atlanta, GA) and were as follows: HLA-B7 restricted HCV Core peptide aa 41–49 (GPRLGVRAT), HLA-A1 restricted HCV NS3 peptide amino acids (aa) 1436–1444 (ATDALMTGY) [A1/NS3-1436], HLA-A2 restricted HCV NS3 peptide aa 1073–1081 (CINGVCWTV) [A2/NS3-1073], HLA-B27 restricted HCV peptide NS5B peptide aa 2841–2849 (ARMILMTHF) [B27/NS5B-2841]. Tetramers were prepared by adding 10 μl of phycoerythrin (PE)-labeled ExtrAvidin (Sigma, St. Louis, MO) five times, with 10 min incubation at room temperature after each addition.
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9

Western Blot Protein Transfer and Detection

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Proteins were transferred to 0.2 μm nitrocellulose membrane (Bio-Rad) following electrophoresis. For primary neuron experiments, membranes were blocked and antibodies were diluted into Odyssey Blocking Buffer (TBS version; LI-COR Biosciences, USA). For all other experiments, membranes were blocked in TBS containing 5% bovine serum albumin (BSA; Sigma) for 1–2 hours at room temperature, and probed with the appropriate antisera/antibodies diluted in 5% BSA-TBST (TBS with 0.1% Tween-20). Primary antibodies were probed with either anti-IgG immunoglobulins conjugated with biotin, HRP or IR dyes (LI-COR Biosciences). When biotin-conjugated secondary antibodies were used, HRP- or IR-conjugated Neutravidin® (Pierce) or ExtrAvidin® (Sigma) was added to amplify the signal. Blots were revealed on a LI-COR Odyssey imaging platform (Li-Cor Biosciences).
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10

Cytokine Quantification by ELISA

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Day 7 DC culture supernatants were assessed for IL-10 and IL-12p70 and potency assay supernatants were assessed for IFNγ cytokine levels by ELISA. EIA plates (Corning) were coated with capture antibody (Becton Dickinson) and left overnight at 4°C. The next day plates were washed (PBS + 0.1% Tween-20) and block (PBS + 1% BSA) was added for at least 1 hour at room temperature. During the 1-hour incubation, samples and cytokine standards (Becton Dickinson) were thawed and diluted. The plates were then washed and samples and cytokine standards added to the plate and left to incubate overnight at 4°C. On the third day, plates were washed 4 times and detection antibody (Becton Dickinson) added. Plates were incubated at room temperature for 1 hour then washed and ExtrAvidin (Sigma) added and left for 30 minutes at room temperature. This was followed by 5 washes and the addition of OPD (Sigma) to develop colour and 3 M H2SO4 after at least 20 minutes to stop the reaction. Plates were read at 490 nm by a plate reader (Labtech). Microsoft Excel (Microsoft Corporation) was used to plot a concentration curve and calculate cytokine concentrations of the samples.
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